Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq870 221 2e-52 seq1261 104 3e-17 >seq870 Length=27993427 Score = 221 bits (244), Expect = 2e-52 Identities = 227/297 (76%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| |||| || ||||| ||||| |||||| | |||| || ||| | || || Sbjct 2058297 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGAGAGGCCG 2058238 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||||||| |||| ||||| | || |||||||||||||||||||||||| | |||| Sbjct 2058237 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 2058178 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| |||| || || || ||||||||||| ||||||| ||| | ||| Sbjct 2058177 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGTGCCCCCATCTCCACCATGG 2058118 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || |||||||| ||| |||||||| ||||||| | |||| ||||||||||| Sbjct 2058117 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCGGGGTACAGCTCCA 2058058 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| ||| ||||| || || || || || || ||||| |||||||||| Sbjct 2058057 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 2058001 Score = 134 bits (148), Expect = 2e-26 Identities = 182/254 (72%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | ||||| || | ||||||||| || |||||||| ||| || || || Sbjct 2056381 TCACCGATCAGAATGAGCCGGGCGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGC 2056322 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 | || || || || ||||| || | |||||| || | |||||||| |||||||||||| Sbjct 2056321 TGGTGCTTGAGCACGTCGCAGACGCGGTTGTGCTCACGCAGCCAGATCGTGGCGTACATC 2056262 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 || ||||| || ||||| || || |||| || || || | | |||| || |||||| Sbjct 2056261 ATCAGCCCTGGCACCAGCCCGAACACCTCCTGCCCCACGGAGAAGCGCAGGTGCTCGGGC 2056202 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | ||| || || | ||| | |||| ||| |||| || || |||||||| Sbjct 2056201 ACGTGGGGTGGGTACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGCGGGTACATTTCT 2056142 Query 9472 CCGTCAATCATCTG 9485 || || |||||||| Sbjct 2056141 CCATCGATCATCTG 2056128 >seq1261 Length=11648728 Score = 104 bits (114), Expect = 3e-17 Identities = 180/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 ||||||| | |||| ||| ||| |||||| || || || || | | ||| Sbjct 10001171 GGAACGCCACATACGGGCACTTCTTCACGTTGAGGCACACGAGCTTCTCGAGGGATGCTG 10001112 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| |||||| | || || |||| || || || ||||| ||||||||| | |||| Sbjct 10001111 TCTTCACGATCTCAAAGCCAGTAGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 10001052 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| || | | || || || ||||| || ||||| || | ||| | |||| Sbjct 10001051 AGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 10000992 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || || ||| ||||||| |||| || || | || || || | ||| | ||||| Sbjct 10000991 TTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCGAGCAGCAAGCCTGGGTAAAACTCCA 10000932 Query 8529 CAGCCTCGACGTCTCCGTAAAG 8550 ||| || | |||||| || || Sbjct 10000931 GAGCATCAATGTCTCCATACAG 10000910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716544384227840