Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1205 145 2e-29 seq1324 143 6e-29 >seq1205 Length=14428146 Score = 145 bits (160), Expect = 2e-29 Identities = 164/217 (76%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| || || || || || || || |||||||| ||||| || Sbjct 1810337 AAAATGC---AGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGA- 1810392 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||||||||| ||||| ||||| |||||||| ||||| ||||||| Sbjct 1810393 -GCCCAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTC 1810451 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| | || || || || || || ||||| |||||||| | || || ||| Sbjct 1810452 CTGACCAGCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTCTCCG 1810511 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| |||| || ||||| || ||||| ||||| Sbjct 1810512 ACTACAACATCCAGAAGGAATCTACTCTGCACCTTGT 1810548 >seq1324 Length=11587733 Score = 143 bits (158), Expect = 6e-29 Identities = 165/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || ||||| |||||||||| ||| || | Sbjct 8089043 CAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTCGAGGTGG--AGCCCAGTG 8089100 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| ||||| || || || ||||||| Sbjct 8089101 ACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAGC 8089160 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 8089161 AGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAACA 8089220 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || ||||| ||||| || || || | ||||| Sbjct 8089221 TCCAGAAGGAGTCAACTCTGCACCTGGTGCTGCGCCTCAG 8089260 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || ||||| || |||||||| || ||| Sbjct 8088815 CAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTGGA--GCCCAGTG 8088872 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| |||||||| ||||| |||||||| ||||||| Sbjct 8088873 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAGC 8088932 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| || ||||| | || || | || || ||| Sbjct 8088933 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACA 8088992 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||||||||| ||||| || || || | || ||| Sbjct 8088993 TCCAGAAAGAATCAACTCTGCACCTGGTGCTGCGCCTGAGA 8089033 Score = 140 bits (154), Expect = 8e-28 Identities = 164/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||||||||| || || || || || ||||| |||||||||| ||| || | Sbjct 8091439 CAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACTCTCGAGGTGG--AGCCCAGTG 8091496 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| || || || ||||| |||||||| ||||| |||||||| ||||||| Sbjct 8091497 ACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCAGACCAGC 8091556 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || || || || ||||| || ||||| | || || | || || ||| Sbjct 8091557 AGAGGCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACA 8091616 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || ||||| || ||||| || || || | ||||| Sbjct 8091617 TCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAG 8091656 Score = 134 bits (148), Expect = 3e-26 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || || |||||||| || || || || ||| Sbjct 8089271 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTTGA--GCCCAGTG 8089328 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| |||||||| ||||| |||||||| ||||||| Sbjct 8089329 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAGC 8089388 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || ||||| || || ||||| || ||||| | || || | || || ||| Sbjct 8089389 AGAGGCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACA 8089448 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || ||||| ||||| || || || | ||||| Sbjct 8089449 TCCAGAAGGAGTCAACTCTGCACCTGGTGCTGCGCCTCAG 8089488 Score = 134 bits (148), Expect = 3e-26 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| || || || || ||| Sbjct 8091667 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGA--GCCCAGTG 8091724 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| |||||||| ||||| || || || ||||||| Sbjct 8091725 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAGC 8091784 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || ||||| || || ||||| |||||||| | || || |||| || ||| Sbjct 8091785 AGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 8091844 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || ||||| ||||| || || || | ||||| Sbjct 8091845 TCCAGAAGGAGTCAACTCTGCACCTGGTGCTGCGCCTCAG 8091884 Score = 113 bits (124), Expect = 1e-19 Identities = 129/168 (77%), Gaps = 8/168 (5%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--GACACCATCGAGAACGTCAAAC 178002 || || || || ||||| |||||||||| |||||| |||||||||||||| ||||| Sbjct 8089734 ACCGGCAAGACCATCACTCTCGAGGTGG--AGCTCAGTGACACCATCGAGAATGTCAAGG 8089791 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| ||||| || ||||| || ||||| | || ||||| || || | Sbjct 8089792 CCAAGATCCAGGACAAGGAAGGCATTCCTCCAGA-CAGCAGAG-CTGATCTTTGCTGGTA 8089849 Query 178063 AACAGCTCGAAGATGGAAGGACTC--TTGCCGATTATAACGTCCAAAA 178108 | ||||| |||||||| | |||| || |||| || ||| |||| || Sbjct 8089850 AGCAGCTGGAAGATGGGCGCACTCCTTTTCCGACTACAACATCCAGAA 8089897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203159075588624