Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1324 147 2e-30 seq1205 118 1e-21 >seq1324 Length=11587733 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | || || | |||||| ||||| || ||||||||| ||||| ||||| Sbjct 8091894 ACAGCCACCCCTGAGGCGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTC 8091835 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 ||| ||||||||| | || || ||||||||||| ||||| ||||| | ||| ||||| | Sbjct 8091834 GGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGG 8091775 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||||| || ||||||||| ||| || ||||| | | ||||| || | ||| Sbjct 8091774 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTC 8091715 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 8091714 AACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 8091664 Score = 141 bits (156), Expect = 9e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| ||| ||| ||||| ||||| |||||||||||||||||| Sbjct 8091425 AGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGC 8091366 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | ||||| || |||| Sbjct 8091365 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCC 8091306 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | ||||| || | ||||||||| | || Sbjct 8091305 TTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGTG 8091246 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGC 41860 || || || || ||||| ||||| || || |||||| Sbjct 8091245 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGC 8091210 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| || ||||||||| ||||| |||||||||||||||||| Sbjct 8089257 AGGCGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGC 8089198 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || || || ||||| | ||| ||||| | ||||| || ||| Sbjct 8089197 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 8089138 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | ||||| || | ||||||||| | || Sbjct 8089137 TTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTG 8089078 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| || || |||||||| Sbjct 8089077 ATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 8089040 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | || || | |||||| ||||| || ||||||||| ||||| ||||| Sbjct 8089498 ACAGCCACCCCTGAGGCGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTC 8089439 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || ||||||||| | || || ||||||||||| ||||| ||||| | ||| ||||| | Sbjct 8089438 AGACAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGG 8089379 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 || | | ||||||||| ||| || ||||| | | ||||| || | ||| Sbjct 8089378 AGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTC 8089319 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 8089318 AACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 8089268 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| || || ||||| ||||| ||||| || ||||||||| Sbjct 8089029 AGGCGCAGCACCAGGTGCAGAGTTGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 8088970 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | || | || ||| Sbjct 8088969 CCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 8088910 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | ||||| || | ||||||||| | || Sbjct 8088909 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTG 8088850 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| || || |||||||| Sbjct 8088849 ATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 8088812 >seq1205 Length=14428146 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || ||||| || |||||||| ||||| ||||||||| Sbjct 1810566 CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAG 1810507 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| ||| | || || ||||||||||| || || ||||| | ||| ||||| | || Sbjct 1810506 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 1810447 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||| | | | ||||| || | ||| ||| Sbjct 1810446 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 1810387 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || || || || ||||| ||||| ||||| |||||||| || Sbjct 1810386 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATTTT 1810337 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| |||||||| || |||||||| ||||| ||||| || |||||||| Sbjct 1810785 AGGCGCAGCACGAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 1810726 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || ||||||||||| || || ||||| | ||| ||||| | || | || ||| Sbjct 1810725 CCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 1810666 Query 41765 TTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || |||| ||| | | ||||| || | ||| ||||| | || Sbjct 1810665 TTGTCC-TGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGT 1810607 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| || || |||||||| Sbjct 1810606 GATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1810568 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || ||||| || |||||||| ||||| ||||| ||| Sbjct 1811022 CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAG 1810963 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| ||| | || || ||||||||||| || || ||||| | ||| ||||| | || Sbjct 1810962 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 1810903 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||| |||||| ||||| | | ||||| || | ||| ||| Sbjct 1810902 ATGCCTTCCTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACC 1810843 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || ||||| ||||| || || |||||||| Sbjct 1810842 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1810796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462089629635200