Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq18114 89.7 1e-12 seq14777 89.7 1e-12 seq10026 86.0 1e-11 >seq18114 Length=23736 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 7945 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 8004 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8005 CCCACGTTGGGC 8016 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| Sbjct 1836 CTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACG 1777 Query 165776 ATGGGC 165781 ||||| Sbjct 1776 TTGGGC 1771 >seq14777 Length=15795 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 124 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 183 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 184 CCCACGTTGGGC 195 >seq10026 Length=41695 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 165698 CTTAAAACGCTTG--CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGG 165755 ||| || |||||| |||| ||||||||||||||||||| ||||| ||||||| || Sbjct 41633 CTTTAATCGCTTGAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGG 41574 Query 165756 TCGTGGGTTCGAGCCCCACGATGGGC 165781 | ||||||||| |||||||| ||||| Sbjct 41573 TTGTGGGTTCGTGCCCCACGTTGGGC 41548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057016395341810