Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq27434 102 8e-17 seq10907 95.1 1e-14 >seq27434 Length=30354 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || || || || || || ||||| || || | || || Sbjct 19182 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 19241 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| ||| Sbjct 19242 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAACGCA 19301 Query 16379 ACCAATCGCTCACC 16392 |||| || |||||| Sbjct 19302 ACCACTCTCTCACC 19315 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 ||||||| ||| |||| || ||||| || | | | || |||||| | | | Sbjct 12609 AAAAATCTGCATCCAGAGTGAAGACATTGTCCATCGTTTCTGCCATAACAGCAAAACGCT 12668 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 ||||||| ||||| ||| ||||||||||| ||||||||||| | |||||||| |||| Sbjct 12669 GATATTCCGAAACTCGCTTCTCAAAGAAATTCGTTTTTCCTTCCAGAGAAATATTCTCCA 12728 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | |||||||||||||||| || Sbjct 12729 TGAAATCAAAAGGATTTTCTG 12749 >seq10907 Length=223548 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | ||||| ||||| || || || ||||||| ||||| ||| || Sbjct 3480 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 3421 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | ||||| || ||||||||||| || ||||| ||||| ||||| || Sbjct 3420 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCT 3361 Query 16379 AC 16380 || Sbjct 3360 AC 3359 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 ||| || || || || || | ||| |||||||||||||| ||||| ||||| || ||||| Sbjct 1363 AATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTG 1304 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || ||||| || || | |||||| | |||||||||||| Sbjct 1303 GAAGCCATAGAAACAACGAGCTTCTGTTATTTGTACTTC 1265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462167503718200