Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq14659 129 5e-25 seq31408 105 6e-18 seq44153 104 2e-17 seq27434 86.0 6e-12 >seq14659 Length=34158 Score = 129 bits (142), Expect = 5e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| |||||||| || ||||| ||||| |||||||| || || || || Sbjct 10307 ACCTCATCTTTGCTGGTGTACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTC 10248 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || ||| ||||| || | ||||| || || ||||||||||||||||||||| Sbjct 10247 CCCAAGTTCTGCTGATTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTACGGCGTG 10188 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| || ||||||||||| Sbjct 10187 CCGGTCTCCGTCTGAGATTCGATGATCGC 10159 >seq31408 Length=4037 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| |||||||| || || |||||| | || || || || Sbjct 3630 CATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTGGAGGTCGAGCCCAG 3571 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || ||||||||| ||| | || |||||||| Sbjct 3570 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCA 3511 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| ||||||| || || || || || Sbjct 3510 GCAGAGGCTCATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 3451 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || ||||||||||| || || | ||||| || || Sbjct 3450 CATCCAGAAGGAGTCTACTCTTCATCTTGTGCTGCGCCTGAGAGGTGG 3403 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| |||||||| || || |||||| | || || || || Sbjct 3174 CATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTGGAGGTCGAGCCTAG 3115 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||||||| | || || || || Sbjct 3114 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 3055 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| ||||||| || || || || || Sbjct 3054 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 2995 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || |||||||| || || || ||||| || | ||| |||| |||| Sbjct 2994 CATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGCCTGCGGGGTGGTA 2945 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 3861 AAAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTGGAGCC 3802 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| | || | || || | || ||||||||||||| | || ||||| Sbjct 3801 CAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGA 3742 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | || || || |||||||| ||| ||||||| || || || || Sbjct 3741 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTA 3682 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || ||||||||||| || || | ||||| || || Sbjct 3681 CAACATCCAGAAGGAGTCTACTCTTCATCTTGTGCTGCGCCTGAGAGGTGG 3631 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| |||||||| || || |||||| | || || || || Sbjct 3402 CATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTGGAGGTCGAGCCCAG 3343 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || ||||||||| ||| | || |||||||| Sbjct 3342 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCA 3283 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| ||||||| || || ||| || || Sbjct 3282 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 3223 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || || |||| || | ||||| || || Sbjct 3222 CATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCGCCTGAGAGGTGG 3175 >seq44153 Length=51076 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| ||||| || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 259 AACATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 318 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | || || | || ||||||||||||| | || ||||| Sbjct 319 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGAT 378 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || |||||||| ||| ||||||| || || || || Sbjct 379 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 438 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| || || ||||| || || | |||||||| || Sbjct 439 AACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 488 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 489 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTGGAGCCCAG 548 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || || || || Sbjct 549 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 608 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| ||||||| || || ||| || || Sbjct 609 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACAA 668 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || ||||| || || ||||| || || | |||||||| || Sbjct 669 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 716 >seq27434 Length=30354 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 ||||| || || || ||||| || ||||||||||| |||||| || ||||||||| || Sbjct 19300 GCGTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGGCTG 19241 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072 ||||| | ||||||||||| || ||||| || Sbjct 19240 AAGAAGAGGGGCCTGATGCCTGGACTGACTTT 19209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445434376469040