Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq10907 120 4e-22 seq27434 114 2e-20 seq20823 107 3e-18 seq14659 87.8 2e-12 >seq10907 Length=223548 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | |||||| ||||| |||||||| ||||||| || | || | Sbjct 3482 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3423 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct 3422 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGG 3363 Query 36300 C 36300 | Sbjct 3362 C 3362 >seq27434 Length=30354 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 19180 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 19239 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 19240 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAACG 19299 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 19300 CAACCACTCTCTCACC 19315 >seq20823 Length=9305 Score = 107 bits (118), Expect = 3e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 9450 AAAATTAAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTT 9509 ||||| ||||| ||| |||| | | |||||||||| | | ||||| || |||||| Sbjct 6791 AAAATAAAAATTATCAATATAACCACATACCCTGCTCCAAATCTGCTGAAGTCCCTCTTT 6732 Query 9510 GATTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGC 9569 || || | || ||||||||||| ||||||| || |||||||| || || || |||||| Sbjct 6731 GACTGCAAGGTGTATGCAGTCAGTCCAAGAAATACAGCAGTAGTAAGAATAAAGGCTTGC 6672 Query 9570 ATAACGACATGCACATCATAGAAAGTAAC 9598 | || || ||||||||||||||| || Sbjct 6671 AAGACAACGGACACATCATAGAAAGTCAC 6643 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || || || | || | ||| || |||||||||||||||| ||| Sbjct 8094 TATTTTTTATTAAATTCTGTCAGCAAATGCAGCAGGTGTAAGAACAGATTGATGACGTCC 8035 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| ||| | || | | || |||||||| || | || || || || | Sbjct 8034 AAGTAGAGGCTGACTGCAGCCAGTATGTACTCTTCAGGGGATAATTTGTGCATCAGCAAA 7975 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || |||||||| ||||| || || ||||| | ||| || || ||||| | |||| Sbjct 7974 TGAGTGTCATAAATAATAAACCCACAGAACAGAAGAGCTCCGGCAGCAGCAATCACCAAA 7915 Query 9408 TCCACTGTTTCACT 9421 || | ||| ||||| Sbjct 7914 TCTATTGTGTCACT 7901 >seq14659 Length=34158 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| ||||||||||||||||| || || | || | ||||||| || || Sbjct 8586 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 8527 Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || || ||||| ||||| |||||| || || ||| | | || || ||||||| || Sbjct 8526 TCTTCTTTCCCTGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 8468 Query 66179 TTCCAAGTATATGGC 66193 |||| ||| ||||| Sbjct 8467 CTCCAGGTAGATGGC 8453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657682568217080