Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq27434 129 8e-25 seq10907 129 8e-25 seq14659 96.9 5e-15 >seq27434 Length=30354 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 19180 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 19239 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| ||||| || || ||||||||||| ||||| ||||| ||||| | Sbjct 19240 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAACG 19299 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 19300 CAACCACTCTCTCACC 19315 >seq10907 Length=223548 Score = 129 bits (142), Expect = 8e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | |||||| ||||| |||||||| ||||||| || | || | Sbjct 3482 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3423 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||||| Sbjct 3422 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGG 3363 Query 42207 C 42207 | Sbjct 3362 C 3362 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376 || ||| ||| |||| || || || || | |||||| |||||||||||||| || ||| Sbjct 1377 TCTTTAGAATCCTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTT 1318 Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || ||||| ||||| || || |||||||| | || || || | ||||||||| Sbjct 1317 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTTATTTGTACTTCT 1264 >seq14659 Length=34158 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || ||| Sbjct 8586 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 8527 Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 || || || ||||| ||||| |||||| || || ||| | | || || ||||||| || Sbjct 8526 TCTTCTTTCCCTGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 8468 Query 72141 TTCCAAGTATATGGC 72155 |||| ||| ||||| Sbjct 8467 CTCCAGGTAGATGGC 8453 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || ||||||||||| | ||| || ||||| || || || || || | Sbjct 2450 CACTGAAGACTTTCTTAGTTTCCTTGTGCAAATTGGACACGGCGATCCTCGCTGCCAGGA 2391 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | || || || || || | || || ||||| ||| |||| || ||||| || |||| Sbjct 2390 TAGCGTAGTCGGGGTGCTTGGTGGTCAGGGTGGCGGCTGTTTCGGCAGCCAGCGTATCCA 2331 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||| ||||| || || ||| | || | || || || |||||||| Sbjct 2330 GTTCCACCGTCGTGACACCACTGTACAGCCCCTGAATCACCTTCAT 2285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670639310356120