Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq10746 172 1e-37 seq31408 159 8e-34 seq27434 113 1e-19 seq10907 107 4e-18 seq17642 89.7 1e-12 >seq10746 Length=46850 Score = 172 bits (190), Expect = 1e-37 Identities = 136/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| | ||||||||| Sbjct 41617 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 41558 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 41557 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 41498 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||||||||||| Sbjct 41497 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGAGGACAAG 41455 Score = 87.8 bits (96), Expect = 4e-12 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 78644 GGACAAGCGTTTCTAGGAGCTGAAATAAATTCATTCGTACACGTTATTATGTATACTTAT 78703 ||||| || ||| | |||||| | || ||| |||| | || || |||||||| | ||| Sbjct 39233 GGACA-GCTTTTTTTGGAGCTCAGATGAATGCATTTATTCATGTCATTATGTACATGTAT 39175 Query 78704 TACGGTATTGCTGCATGCGGCCCTACATTTCGTAAGTATTTGTGGTGGAAGAGATATCTT 78763 || || | ||||| || || |||| ||||| ||||| ||||||||||| |||| | Sbjct 39174 TATGGATTAGCTGCCTGTGGACCTAAATTTCAGAAGTACCTGTGGTGGAAGCGATACTTG 39115 Query 78764 ACTATAATGCAATTG 78778 || ||| |||||||| Sbjct 39114 ACCATATTGCAATTG 39100 >seq31408 Length=4037 Score = 159 bits (176), Expect = 8e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | ||||| || ||||| || || |||||| Sbjct 3628 ATGCCACCTCTCAGGCGCAGCACAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCA 3687 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || |||||||| ||||| || Sbjct 3688 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGG 3747 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || ||||| || | ||| || || || || Sbjct 3748 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCC 3807 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || || || ||||| ||||| || || || ||||| ||||||||||| Sbjct 3808 ACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 3860 Score = 158 bits (174), Expect = 3e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || |||||||| || || | || ||||| || || || ||| Sbjct 2977 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 3036 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| |||||||| || || ||||| || ||||| ||||| || || Sbjct 3037 GCAAAGATGAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 3096 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || ||||| || ||||| || || || ||||| || || || || Sbjct 3097 ACATTCTCAATGGTGTCACTAGGCTCGACCTCCAGGGTGATGGTCTTCCCTGTCAGGGTC 3156 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 3157 TTCACAAAGATCTGCAT 3173 >seq27434 Length=30354 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 19303 GTTGCGTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 19244 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||| | |||||||| || ||| | || ||||| || Sbjct 19243 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 19184 Query 269258 GA 269259 || Sbjct 19183 GA 19182 >seq10907 Length=223548 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| || ||||| || || ||||| || |||||||| || |||||||| Sbjct 3347 GGAGAACGTGTAGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 3406 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||||||| | Sbjct 3407 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAACGAACTC 3466 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 3467 ATCAGTAGAGATGA 3480 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| |||| ||||||| ||||| || | ||||| | ||||| || || | Sbjct 1242 TCTAGGTGGAGCGGTTCGGTCAAGAAGTACAAATAACAGAAGCTCGTTGTTTCTATGGCT 1301 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 ||||||| || || |||||||| |||||||| ||||||||||| | || || || || | Sbjct 1302 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACA 1361 Query 269016 T 269016 | Sbjct 1362 T 1362 >seq17642 Length=13622 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| |||||||| |||||||| || || | || |||||||| || ||||||||||||| Sbjct 13051 CTTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTTCCAGCAAAAA 13110 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 | || | ||| ||||||||||| || ||| Sbjct 13111 TCAGTCGCTGCTGATCAGGAGGAATGCCT 13139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150519355176596