Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq13622 132 8e-27 seq11329 132 8e-27 seq43546 127 3e-25 >seq13622 Length=1463 Score = 132 bits (146), Expect = 8e-27 Identities = 192/271 (71%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1301 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 1242 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 1241 CCGCCGCCTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 1182 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 1181 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 1122 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | ||||| || | || || || || Sbjct 1121 GCACGCCAAGAGGAAGACGGTGACTGCCATGGACGTGGTCTACGCCCTTAAGCGCCAGGG 1062 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || || || || ||||| || Sbjct 1061 ACGCACTCTCTACGGCTTCGGCGGTTAAACT 1031 >seq11329 Length=31498 Score = 132 bits (146), Expect = 8e-27 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 9076 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 9017 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 9016 CCGCCGCCTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 8957 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 8956 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 8897 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||||| ||| | ||||| || || ||||||| Sbjct 8896 GCACGCCAAAAGGAAGACGGTAACTGCCATGGA 8864 >seq43546 Length=2816 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 222 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 281 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 282 CCGCCGCCTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 341 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| || | ||| || || ||| ||||| Sbjct 342 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATTCGTGACGCCGTCACCTACACCGA 401 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | ||||| || | || || || || Sbjct 402 GCACGCCAAGAGGAAGACGGTGACTGCCATGGACGTGGTCTACGCCCTTAAGCGCCAGGG 461 Query 16672 CCG 16674 || Sbjct 462 ACG 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79020719188791