Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq14659 93.3 8e-14 seq27434 87.8 3e-12 seq10907 84.2 4e-11 >seq14659 Length=34158 Score = 93.3 bits (102), Expect = 8e-14 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| || | ||||||||| || || || || || || || ||||| |||||||| Sbjct 10307 ACCTCATCTTTGCTGGTGTACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTC 10248 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 |||| || ||| |||||| ||| |||||||| ||| |||||||||||| | ||| Sbjct 10247 CCCAAGTTCTGCTGATTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTACGGCGTG 10188 Query 244826 CCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCT 244884 |||||||| ||| | ||| || ||| || |||||| | | ||||| ||| || Sbjct 10187 CCGGTCTCCGTCTGAGATTCGATGATCGC-GTACCAGAGCTGCTGGGCCTTCACCACTCT 10129 Query 244885 GCG 244887 ||| Sbjct 10128 GCG 10126 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || || || | ||| ||||| ||||||| || ||||||||| Sbjct 14707 ACCTGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATG 14648 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 || ||||||||| ||||| || || ||||| |||||||| || | || || Sbjct 14647 GATTCGTTGTTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAGG 14588 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 |||||||| || |||| ||| Sbjct 14587 CTGTTCCTGACACCGTACCT 14568 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || || ||||||||||| ||| ||||| |||| | |||||| || Sbjct 8581 CTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTC 8522 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 || ||||||||| | | || | ||| ||||||| ||| | ||||| ||||||| Sbjct 8521 TTTCCCTGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAG 8462 Query 245128 GTAGA 245132 ||||| Sbjct 8461 GTAGA 8457 >seq27434 Length=30354 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| || ||| | || || || ||||||||||| ||||| |||| || Sbjct 19315 GGTGAGAGAGTGGTTGCGTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 19256 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||||| || ||||| || ||||| Sbjct 19255 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTT 19196 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 19195 ATTAGCAGAGATGAGG 19180 >seq10907 Length=223548 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || || |||||||| || ||| | || || || || || ||| Sbjct 3359 GTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCAATTTTTTGG 3418 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| | | | | ||||| |||||||| || || |||||||||||||| || || Sbjct 3419 CTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAACGAACTCATCAGTAGAGAT 3478 Query 42828 GAGG 42831 |||| Sbjct 3479 GAGG 3482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943635820751120