Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq39065 170 3e-37 seq6541 114 2e-20 >seq39065 Length=63633 Score = 170 bits (188), Expect = 3e-37 Identities = 183/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| |||| |||||||||| |||| |||||||| || ||||| || Sbjct 4243 ATGAGTCTAGTAGTTTGGAACAGCTGCTCGTCATCCCACTCCGGGTGCTCCTGTTTCAGG 4184 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | |||||||||| ||||||||| ||||||||||| || ||||||||||| || ||||| Sbjct 4183 ATGTCGCAGACCCGGTTGTGTTCCCTCAGCCATATCGTAGCGTACATCATCAAGCCCGGG 4124 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||| ||||| || | |||||| | ||| ||| | || ||||| | || | Sbjct 4123 ACCAAACCGAACACCTCCTGCCCCACGGAAAACTGCAAGTGTTCAGGCACATGAGGAGGG 4064 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || |||| | | Sbjct 4063 TAGATCATCTCTGCCTGAGTGTCCTTCACAGTTGGTGGATACATTTCTCCACCAATCATC 4004 Query 9967 TG 9968 || Sbjct 4003 TG 4002 Score = 138 bits (152), Expect = 2e-27 Identities = 208/296 (70%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||| ||| || ||||| ||| | || || | Sbjct 7039 GGAAGGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 6980 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| || ||||||||| | |||| Sbjct 6979 TGTTGATTATTTCGAAGCCCACTTTTCCACCAAAGGTGCTCGGCTTCCAGTACTCAGGGG 6920 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| | || |||| || ||||||| || ||||| || || | ||| | || Sbjct 6919 AGCAGATGGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCTATCTCCACCATCG 6860 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 |||| || ||||||||||| || || |||||||| |||| || ||| | || || || | Sbjct 6859 TCTCGCCAAAGATGGCACCTGGCCGTGGTTTTTCCACGAGGAGGCCTGGATACAGCTCCA 6800 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || | || ||||| || |||||| || || || || || || || ||| Sbjct 6799 TCGCATCAATATCTCCATAAAGCTCTTCCAGTTCAGCCGCCATTTCTTTTTCTCCT 6744 Score = 95.1 bits (104), Expect = 2e-14 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 ||| || |||||||| | ||| || | | || |||| | |||| ||| | ||| Sbjct 5491 GATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCGTGTATCTGGAAAGT 5432 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||||||| || | |||||| ||||||| || ||||| ||||| || ||||||||||| Sbjct 5431 GTCAGGCAGGAGCGGGTGCCAGTGGTAGAGAGTGTTGAATTCGGCTGCAATTCGGTTCTG 5372 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||| ||||| | ||| |||||| | ||| || ||||| | || | ||||||||| Sbjct 5371 GTATTGAAATCGCTGGT--TGAACAGCAGCTCGGGATCAAACTTGAGTTTGAAGTGGTAG 5314 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 || || | || || || || | ||| | ||| || || || || || || Sbjct 5313 CCACTCAAGTGTTGCACGTAGTCCTCGATAACAATCTTGATTGTCTCTCCTGT 5261 >seq6541 Length=23092 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 || |||||||| ||||||||||||||| | |||||||||||| ||| ||| |||||| Sbjct 12983 CCACCGAAGGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCCAGAAGCCCT 13042 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| |||||| ||||| || | ||| | ||||| || || || || || ||| | Sbjct 13043 TTCAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCTCCAAAAATACCATTGGGTTGG 13102 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| || | || | ||| || | ||| ||||| || || Sbjct 13103 GGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATACAGCTCT 13162 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| || || |||| | ||| ||| || Sbjct 13163 TCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCA 13195 Score = 86.0 bits (94), Expect = 9e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| ||| |||||| | ||||| |||||||| |||| || || ||| || Sbjct 14757 TCAGGCATCAGCCCGTGCCAGTGATAGAGCTGGTTGAACTCCACCGCGATGCGATTCCGG 14816 Query 9613 TACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCG 9672 ||||| || || || ||||| | ||| |||||||| | || || | ||||||| Sbjct 14817 TACTGGAACTGCGTCCCAAACAGCAGCTCGGGGTCAAACTTGAGGCTGAGGAAGTACCCG 14876 Query 9673 CTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||||| |||||||| || | | || | || |||||||| ||||| Sbjct 14877 CTGAGATGCTGGACGTAGTCTTCAATGACGATCTTAATGGTCTCCCC 14923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723188940245800