Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq31408 140 8e-28 seq44153 127 5e-24 >seq31408 Length=4037 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| || ||||| |||||||| |||| ||||||||||| || || | ||||| Sbjct 3417 CAGCACAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 3476 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || ||||||||||| | ||||||||| || ||| || || || Sbjct 3477 TTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 3536 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| || | |||||| | | || || |||| ||||| || Sbjct 3537 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGT 3596 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 3597 CTTCCCTGTCAGGGTCTTCACAAAGATCTG 3626 Score = 127 bits (140), Expect = 5e-24 Identities = 160/219 (73%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| || ||||| |||||||| |||| ||||||||||| || || | ||||| Sbjct 3645 CAGCACAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 3704 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || ||| ||||| || Sbjct 3705 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 3764 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| | | || || || | ||||| || Sbjct 3765 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGT 3824 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| || || || || |||||||| || || |||||| Sbjct 3825 CTTGCCAGTCAGGGTCTTCACAAAGATCTG---CATTTT 3860 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| || || |||||||| |||| ||||||||| | || || | ||||| Sbjct 3189 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 3248 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || |||||||| | ||||||||| || ||| || || || Sbjct 3249 TTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 3308 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| || | |||||| | | || || |||| ||||| || Sbjct 3309 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGT 3368 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 3369 CTTCCCTGTCAGGGTCTTCACAAAGATCTG 3398 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || || || || |||| ||||||||||| || || Sbjct 2953 CGCAGGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTG 3012 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || || |||||||| | |||||| || || ||| ||| Sbjct 3013 CGCCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCAGGGGGAATGCCT 3072 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || || | |||||| | | || || |||| Sbjct 3073 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCCAGG 3132 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || |||||||| || || Sbjct 3133 GTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTG 3170 >seq44153 Length=51076 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| ||||| || || ||||| |||| ||||||||||| || || | ||||| Sbjct 474 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 415 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || ||| ||||| || Sbjct 414 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 355 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| | | || || || | ||||| || Sbjct 354 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 295 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||||||||| || Sbjct 294 CTTGCCAGTCAGGGTCTTCACAAAAATCTG 265 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| ||||| || || ||||| |||| ||||||||| | ||| || | ||||| Sbjct 702 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATC 643 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || ||| ||||| || Sbjct 642 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 583 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| | | || || || | ||||| || Sbjct 582 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGT 523 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 522 CTTGCCAGTCAGGGTCTTCACAAAGATCTG 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178021542357329