Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq31408 140 7e-28 seq44153 131 4e-25 >seq31408 Length=4037 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| |||||||| ||||| || || || ||||| || | || || Sbjct 3408 TCTCAGGCGCAGCACAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 3467 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || |||||||| || | || ||||| || |||||||| Sbjct 3468 GCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCGGGGGGAATGCC 3527 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || ||||||||||||||||||||| || || || || Sbjct 3528 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAG 3587 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| ||||||| || || || || | ||||| Sbjct 3588 GGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 3629 Score = 140 bits (154), Expect = 7e-28 Identities = 168/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| |||||||| ||||| || || || ||||| || | || || Sbjct 3636 TCTCAGGCGCAGCACAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 3695 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || ||||| || | || || || || |||||||| Sbjct 3696 GCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCC 3755 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || || ||| || |||||||||||||| ||| |||||||| Sbjct 3756 TTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCCACTTC 3812 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 |||||| | ||||| || |||| || || || || | ||||||| Sbjct 3813 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTT 3859 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || | ||| || |||||||| || || || ||||| |||| || || Sbjct 3180 TCTCAGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 3239 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || ||||| || | || ||||| || |||||||| Sbjct 3240 GCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCC 3299 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || ||||||||||||||||||||| || || || || Sbjct 3300 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAG 3359 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| ||||||| || || || || | ||||| Sbjct 3360 GGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 3401 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| ||||| || || ||||| || | || || | ||||||||| Sbjct 2965 ACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 3024 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 3025 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 3084 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| |||||||||||||| | || || || ||||| | ||||| Sbjct 3085 ATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCCAGGGTGATGGTCTTC 3144 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || || || | ||||| Sbjct 3145 CCTGTCAGGGTCTTCACAAAGATCTGCAT 3173 >seq44153 Length=51076 Score = 131 bits (144), Expect = 4e-25 Identities = 159/213 (75%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 ||||| || || ||||| || || || || ||||| |||| |||| || | ||||||||| Sbjct 698 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGCCCATCTTC 640 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 639 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTG 580 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGT 195107 || || ||| || |||||||||||||| ||| |||||||||||||| | || Sbjct 579 GATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCCACTTCAAGGGTGATGGT 523 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||| || || || || | ||||| Sbjct 522 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 490 Score = 118 bits (130), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| || | || || | ||||||||| Sbjct 470 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 411 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 410 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 351 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || || |||||||| | ||| Sbjct 350 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTC 294 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 293 TTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108634556911229