Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq31408 113 3e-20 seq44153 98.7 6e-16 >seq31408 Length=4037 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || |||| | || |||||||| | ||| || ||||| ||||| ||||| || Sbjct 3175 CCACCTCTCAGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3234 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 3235 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 3294 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| |||||| | || | || | || ||| || Sbjct 3295 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 3354 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || || || |||||||||||||||||||| Sbjct 3355 TCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 3401 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || || |||| || | || |||| ||| | ||| ||||||||| ||||| ||||| Sbjct 2944 TTACCACCCCGCAGGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCA 3003 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || ||| | || |||| |||||||| || || ||||| || || | ||||| || | Sbjct 3004 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCAGGG 3063 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCT 34929 || | || |||||||| ||||| ||||| || || || | |||| | || Sbjct 3064 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTAGGCT 3121 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | ||| ||||| || || || || |||||||||||||||||||| Sbjct 3122 CGACCTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 3173 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 3439 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAG 3498 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||||| |||||| Sbjct 3499 ATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 3558 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || ||| || || | ||| ||||| || || || || ||||||||| Sbjct 3559 TCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACA 3618 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 3619 AAGATCTGCAT 3629 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 3667 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAG 3726 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | || |||||||| ||||| || || || Sbjct 3727 ATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--AT 3784 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || || || || ||||||| Sbjct 3785 TCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 3844 Query 34969 CAAAGATCTGCATATT 34984 ||||||||||||| || Sbjct 3845 CAAAGATCTGCATTTT 3860 >seq44153 Length=51076 Score = 98.7 bits (108), Expect = 6e-16 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 453 TTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 394 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| || | || | || |||||||| ||||| || || | Sbjct 393 GATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--A 336 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || |||||| || | ||| ||||| || || || || |||||| Sbjct 335 TTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 276 Query 34968 ACAAAGATCTGCATATT 34984 ||||| |||||||| || Sbjct 275 ACAAAAATCTGCATGTT 259 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || | | | || |||| |||||||| || || ||||| Sbjct 681 TTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 622 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| || | || | || |||||||| ||||| || || | Sbjct 621 GATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--A 564 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| || || | ||| ||||| || || || || |||||| Sbjct 563 TTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 504 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 503 ACAAAGATCTGCAT 490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324397845702936