Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq45112 125 5e-23 seq44153 87.8 1e-11 seq31408 86.0 4e-11 >seq45112 Length=29911 Score = 125 bits (138), Expect = 5e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| |||| ||| | ||||| ||||| ||||| ||||| ||||| ||||| || || Sbjct 28582 GTCACTAATGCTGTAGTGACTGTGCCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 28523 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| |||| |||||||| || ||||| | || ||||| ||||| |||||||| Sbjct 28522 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAATGAGCCAACAGCT 28463 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || | ||||||||||| || || || Sbjct 28462 GCTGCGATAGCTTATGGTCTGGACAAAAA 28434 Score = 125 bits (138), Expect = 5e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| |||| ||| | ||||| ||||| ||||| ||||| ||||| ||||| || || Sbjct 28782 GTCACTAATGCTGTAGTGACTGTGCCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 28723 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| |||| |||||||| || ||||| | || ||||| ||||| |||||||| Sbjct 28722 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAATGAGCCAACAGCT 28663 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || | ||||||||||| || || || Sbjct 28662 GCTGCGATAGCTTATGGTCTGGACAAAAA 28634 Score = 104 bits (114), Expect = 2e-16 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || |||||||||||||| || |||||||||||||| Sbjct 26876 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAAATTGAAGTCACCTTTGATATTGATGCC 26817 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || ||||| ||||| ||||| Sbjct 26816 AATGGCATCCTCAATGTGTCTGCTGTGGATAA 26785 >seq44153 Length=51076 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || || | || ||||| || ||||| |||||||| Sbjct 417 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTT 358 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| || ||| ||||| || ||| || | | |||||||| || Sbjct 357 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGAT 298 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || ||||| || Sbjct 297 GGTCTTGCCAGTCAGGGTCTTCACAAAAATCTG 265 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || || | || |||||||| ||||| |||||||| Sbjct 645 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 586 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| || ||| ||||| || ||| || | ||||||||| || Sbjct 585 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGAT 526 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || || || || Sbjct 525 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 493 >seq31408 Length=4037 Score = 86.0 bits (94), Expect = 4e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || || || ||||||||||| ||| || || | || || |||| || || | Sbjct 3640 AGGCGCAGCACAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 3699 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| |||||||| || || | || ||||| || ||||| |||||| Sbjct 3700 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCC 3759 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| || ||| ||||| || ||| || | ||||||||| Sbjct 3760 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTG 3819 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || ||||| || || || || Sbjct 3820 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 3854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265623224453876