Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq36892 203 4e-47 seq13820 123 3e-23 >seq36892 Length=25348 Score = 203 bits (224), Expect = 4e-47 Identities = 594/909 (65%), Gaps = 7/909 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| | || |||| ||| | || || || ||||| || ||| || | Sbjct 11026 TGTGTCGCAAGTACTCTTCCAAACACTTCACTGCAAAGGGATCAACATCAGTGTCAAACT 10967 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||| | || ||||| ||| || | Sbjct 10966 TATTAGCAAAGAAGTGGTG---GTTTCGTAGTATCCACTTCAGATCTCCTACCCCAAAAA 10910 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | ||| || || |||| || ||||| | || |||| | ||| | Sbjct 10909 CACAGACAGAGCGAACGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTGAGACACAT 10850 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | || | |||||| || |||| Sbjct 10849 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACATCGT 10790 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | || | || || | ||| ||||| || || | || || | ||| | || |||||| Sbjct 10789 ACTTAT-CACTAGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCAC 10731 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || || |||||||| ||||| || | ||| || ||||||| ||| ||| Sbjct 10730 AGGTACTCATCTGGGCTGTAGGTGTCTTTTGCCCACTCAATGAACTTAAGTATTTTGCTG 10671 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | || | || | |||| | || ||||| || || || || || || Sbjct 10670 CTTTCTAACACATATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 10611 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || || | ||| || | |||||| ||| ||||| | || | Sbjct 10610 ATTGGAGTGCTGAGAGGTGGTAGTTGTTTGTCTACACCTGTGTTCTTTATTTTACCATCA 10551 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || |||||||| | || | ||||| |||||| || Sbjct 10550 ATAATCTCATGGTGTTTTTTCCACCTCATTTCTTTATTAACAGGCATTTTTTCCGTTTCC 10491 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | | | ||| | | || || || || |||||||||| | Sbjct 10490 AAGCTGTTTTCACCATTTAAGGCTTTTAATTTCTCTACTATTTCCTGGTTCGTCTTTATA 10431 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | || || | |||||||| ||| ||||| || | || ||| || Sbjct 10430 GGAAAGTCCATGCCACAGAGGTTTATCAGGTATTTCCAGTTTGAACTTCTTCTGTGGAGA 10371 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| |||||||| || | |||||| ||||| || || || ||||| Sbjct 10370 TCTTTCATGCAGTTAATGTCTGCCTGTACCCTGCTCCATGAAGCATATACAACACTCTCT 10311 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | |||||| || || ||||| || || |||||| ||| | ||| || Sbjct 10310 AACTGGCTGGAAATAAAGACATTGTCAAAACATGAGACTATTCCCTTCACAG-CAGCAAA 10252 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || || | | |||| ||| || || | ||| || | |||||||| || ||||| Sbjct 10251 AAAGGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGAT 10192 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| || || || || || Sbjct 10191 TGATCTTAGGAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATTGAATAAGCAAT 10132 Query 160943 CGGAAACTC 160951 ||||| || Sbjct 10131 TGGAAATTC 10123 >seq13820 Length=14146 Score = 123 bits (136), Expect = 3e-23 Identities = 234/345 (68%), Gaps = 16/345 (5%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| ||||| || || ||||| || |||| |||| |||| || |||||| | Sbjct 1131 TGTGGCGCAGGTGCTCCTCCAGGCACTGGATGGCGGCATCGTCCACTCGGGGGTCGAACT 1072 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || || ||||| | ||| || |||||| ||||||| || |||| | | Sbjct 1071 TGTTGGCCAAGAGGTGGTGC---TGCTGGAGCATCCAGGGCACGTCGCCCACCCCGTAGA 1015 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||||||||| || |||| |||| |||| || ||||| | || || || || Sbjct 1014 TGCAGACGGAGCGCTGGTGCCGGCCGGTGCAGGGTGGGTATGGCGCGCCCTTGCTGGTGT 955 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || |||||||||||| || | | || ||| | ||| | | Sbjct 954 CGCCCTCCATGTACTGCCACTTGACCAGGCGGG---------GCAGGGCGGT----TTGA 908 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | |||| || |||| | ||| || || ||||||||||| || | ||||||||||| | Sbjct 907 ACTTGTCACTCTGGGGCATGGCGCCTGGCACGCCGGGCATGCGGTTGAGGGTGGCCCAGA 848 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 ||| ||||| |||||||| |||||||| | ||| || | ||||| Sbjct 847 CGTGCTCGTCAGGGCTGTAGGTGTCCTTGGCCCACTCAAGGAACT 803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576789265494120