Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq42173 107 3e-18 seq34254 86.0 8e-12 >seq42173 Length=15205 Score = 107 bits (118), Expect = 3e-18 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 10471 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 10412 Query 8717 CCCCGACGAGGAGCAGAGGCC 8737 |||||||| |||| |||||| Sbjct 10411 CCCCGACGGGGAG--GAGGCC 10393 Score = 105 bits (116), Expect = 9e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 8652 CCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTT 8711 ||| | ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||| Sbjct 9611 CCTCACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTT 9552 Query 8712 CGATTCCCCGACGAGGAGCAG 8732 ||||||||||||| |||| || Sbjct 9551 CGATTCCCCGACGGGGAGGAG 9531 Score = 102 bits (112), Expect = 1e-16 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 9608 CACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 9549 Query 11786 TTCCCCGACGAGGAGG 11801 |||||||||| ||||| Sbjct 9548 TTCCCCGACGGGGAGG 9533 Score = 102 bits (112), Expect = 1e-16 Identities = 72/81 (89%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 11722 TAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGG 11780 || ||| ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||| Sbjct 10478 TAGCCCGTTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 10419 Query 11781 TTCGATTCCCCGACGAGGAGG 11801 ||||||||||||||| ||||| Sbjct 10418 TTCGATTCCCCGACGGGGAGG 10398 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 9534 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 9593 Query 139413 TACTAACGAGGATTTTGGTA 139432 |||||||||||| | |||| Sbjct 9594 TACTAACGAGGAGTGAGGTA 9613 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 10399 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 10458 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 10459 TACTAACGAGGA 10470 >seq34254 Length=61937 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 8664 TTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGAC 8723 ||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||||| || Sbjct 25214 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCTGAT 25273 Query 8724 GAGGAGC 8730 | ||||| Sbjct 25274 GGGGAGC 25280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652358536711280