Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq36892 147 3e-30 >seq36892 Length=25348 Score = 147 bits (162), Expect = 3e-30 Identities = 545/845 (64%), Gaps = 18/845 (2%) Strand=Plus/Minus Query 162159 TATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCA 162218 |||||| || ||||| || || || || || || || || ||||| || || ||||| Sbjct 10938 TATCCACTTCAGATCTCCTACCCCAAAAACACAGACAGAGCGAACGTGAACTCCACTGCA 10879 Query 162219 CGGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCT 162278 || || || | || || | |||||| || || |||| |||||||| || ||||| Sbjct 10878 TGGTGGGTAGGGTGCACCTTGAGACACATCACCTTCAAAGTACTGCCACTTGACAAACCT 10819 Query 162279 AGTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAA 162337 | | || | |||||| || |||||||| | |||| || | || || || || | Sbjct 10818 GGCCAGTGCATTCATGTCAGAAACATCGTACTTAT-CACTAGAAGAAACTGCACCTGGGA 10760 Query 162338 CACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCG 162397 | | || | |||||| | || |||||||||| || ||||| || || || || || | Sbjct 10759 CTTCAGGGATTCTCTGAATTGTTGCCCACAGGTACTCATCTGGGCTGTAGGTGTCTTTTG 10700 Query 162398 ACCACTCCATGAACTCCCTGACCGTTTTATCG---TATAGAATGTAAGAGACGTAGGACC 162454 |||||| ||||||| | | |||| | | || | || || | | Sbjct 10699 CCCACTCAATGAACT---TAAGTATTTTGCTGCTTTCTAACACATATTCTACAAATCTTC 10643 Query 162455 TGGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTT 162514 || | || | ||| || || ||||||||||| | || ||| | ||| || | | || Sbjct 10642 TGCTAACTACAAAATAGGCACTACCAGAAAAAATTGGAGTGCTGAGAGGTGGTAGTTGTT 10583 Query 162515 TGTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGG 162574 ||||| ||| ||||| || | || || | | | | || || ||||||| Sbjct 10582 TGTCTACACCTGTGTTCTTTATTTTACCATCAATAATCTCATGGTGTTTTTTCCACCT-- 10525 Query 162575 CCATCT---TACTGGTAGACGGGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCT 162631 ||| | || | || | | ||| || || | ||||| ||| ||||| | Sbjct 10524 -CATTTCTTTATTAACAGGCATTTTTTCCGTTTCCAAGCTGTTTTCACCATTTAAGGCTT 10466 Query 162632 TCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAA 162691 | | | || || || | || ||||| | |||||||| |||| ||||| || | Sbjct 10465 TTAATTTCTCTACTATTTCCTGGTTCGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTA 10406 Query 162692 TAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCT 162751 | | |||||||| || || || || ||||| | | ||||| | || |||| Sbjct 10405 TCAGGTATTTCCAGTTTGAACTTCTTCTGTGGAGATCTTTCATGCAGTTAATGTCTGCCT 10346 Query 162752 GGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGT 162811 | || | ||||| || || || || || ||||| ||| ||| | ||||||||||| Sbjct 10345 GTACCCTGCTCCATGAAGCATATACAACACTCTCTAACTGGCTGGAAATAAAGACATTGT 10286 Query 162812 CGAAACACGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATC 162869 | ||||| || ||||| ||| |||| | ||| | || || | |||| | || Sbjct 10285 CAAAACATGAGACTATTCCCTTCACAG-CAGCAAAAAAGGATTCTGGAGACTTT-TTGTC 10228 Query 162870 TACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACAT 162929 || || | |||||| | |||||||||||| ||||| | || || | ||| || | ||| Sbjct 10227 AACATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGATCTTAGGAGTCTATCAAGCAT 10168 Query 162930 CTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACT 162989 ||| || || || | ||||| || ||||| || || || || || || || || || Sbjct 10167 CTCAATTTTGTGATAAACCACTATTGAATAAGCAATTGGAAATTCTGCTTCTTCATTGCT 10108 Query 162990 GAGAG 162994 ||||| Sbjct 10107 GAGAG 10103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578001162155200