Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq10907 116 3e-21 seq6888 107 2e-18 >seq10907 Length=223548 Score = 116 bits (128), Expect = 3e-21 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 ||||| | |||||||| ||| || ||||||| || ||||| ||||| || || |||||| Sbjct 1253 CGGTTCGGTCAAGAAGTACAAATAACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCC 1312 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || |||||||| ||||| ||||||||||||||||| || || || ||||| || ||| Sbjct 1313 ATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAGGAT 1369 >seq6888 Length=22335 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 41045 TTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACT 41104 ||||||||| ||||| || || ||| | || ||||| || ||| ||||||||| | Sbjct 5287 TTTGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATT 5346 Query 41105 GTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 ||| || ||| | ||||| || || || || ||||||||||| || || || || || || Sbjct 5347 GTCTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGC 5406 Query 41165 GAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 || ||| | |||||||| || |||||||| || || || Sbjct 5407 CAGCTATTCACTGCTCACATACATGATTGCCCATGTCAC 5445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397167360869935