Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq14659 105 8e-18 seq27434 86.0 8e-12 seq10907 84.2 3e-11 >seq14659 Length=34158 Score = 105 bits (116), Expect = 8e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || |||||||| | ||||||||||| | ||| | || || ||||| Sbjct 10305 CTCATCTTTGCTGGTGTACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCC 10246 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 ||| |||| || || |||||| ||||||| | || |||||||||||||| ||||| || Sbjct 10245 CAAGTTCTGCTGATTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTACGGCGTGCC 10186 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||||||||| |||| || || || | ||| Sbjct 10185 GGTCTCCGTCTGAGATTCGATGATCGCGTACCA 10153 >seq27434 Length=30354 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| | |||||||||||| ||||| || || ||||| || |||| ||||| Sbjct 19180 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 19239 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||| |||| | ||||| ||| || || || || |||||||| || || || |||||| Sbjct 19240 TCAGCCAAAATATAGCAGCA-AAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAC 19298 Query 122797 GCAA 122800 |||| Sbjct 19299 GCAA 19302 >seq10907 Length=223548 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429 ||| || || || ||||||||||||||||||||||| || || || ||||||||||| Sbjct 4756 ATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTGCCTTCCAGAGAGATGTTTTCCAT 4697 Query 122430 AAAGTCAAATGGATTCTTCGCGTT 122453 |||||||| ||||||| ||| || Sbjct 4696 GAAGTCAAAAGGATTCTCCGCTTT 4673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627564218215200