Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq178 95.1 1e-14 seq27434 86.0 7e-12 seq17119 82.4 8e-11 seq14659 82.4 8e-11 >seq178 Length=19686 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | |||||| | || || ||||| ||||| || |||||||| Sbjct 10338 GTAAAGATGTATCGAGGGCTGGCAGAGTCTTTCCCACCGTGCAGCCTTGTGCCAAACTGA 10397 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | |||||||||||| |||||| || ||||||||||| || | | Sbjct 10398 CCAATGGGCTGTAGCAAGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCCAAGTTAATA 10457 Query 152149 ATCGT 152153 ||||| Sbjct 10458 ATCGT 10462 >seq27434 Length=30354 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | || |||||||| || || | ||||||| Sbjct 19182 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 19241 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGAC 74878 | |||||| || ||| |||||||| |||||||||||||| || Sbjct 19242 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAAC 19288 >seq17119 Length=59516 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| || |||| || ||||||||||| |||||| ||| | ||||| || || Sbjct 10973 GTGAAAATATAGCGAGGACTGGCAGCATCCTTCCCACCATGAAGCCTGGTACCAAACTGA 11032 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | || || | || || ||| |||||||| ||||||||||||||| Sbjct 11033 CCAATAGGTTGTAGCAGATTGACATTATTACTGCCAACAAAGTTCTGAGCCAAGTTGACA 11092 Query 117425 ATCGT 117429 || || Sbjct 11093 ATAGT 11097 >seq14659 Length=34158 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 ||| ||| | | || |||||||| || || || ||||||||| ||||||||||||| | Sbjct 14588 CCTTCTCCTTTCTCCCATGCCAACTGCTTCTACTGCTCAGATCTTGGGCAACAACGAATC 14647 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTT 55606 ||||||| ||||| | |||||||||| ||| | ||| |||| |||||| Sbjct 14648 CATCGAGCCCTACACCAGCAACATCTACACACGCAGAGTCCTCTCAGGAGAGTTT 14702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546808413002600