Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq31408 114 1e-20 >seq31408 Length=4037 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | ||| | |||||| || || ||| ||| || || || || || || Sbjct 3171 CATGCCACCTCTCAGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 3230 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || | || || ||||| ||||| ||||| || || | ||||||||||| Sbjct 3231 GGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGG 3290 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||| |||||| ||| || |||| || | | || ||||| | ||| Sbjct 3291 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTC 3350 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | || || ||||| || || |||||||| ||||| Sbjct 3351 GACCTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 3401 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | ||| | ||| | ||| || || ||| || || || || || || Sbjct 3399 CATGCCACCTCTCAGGCGCAGCACAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 3458 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || || | || || ||||| ||||| || || || || | ||||||||||| Sbjct 3459 AGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCGGG 3518 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||| |||||| ||| || |||| || | | || ||||| | ||| Sbjct 3519 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTC 3578 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | || || ||||| || || |||||||| ||||| Sbjct 3579 GACCTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 3629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429233656870931