Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tauraco_20erythrolophus_20[refseq_20GCF_5F000709365.1_202014-06-25] 59,587 sequences; 1,155,540,733 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq39065 158 2e-33 seq6541 100 4e-16 >seq39065 Length=63633 Score = 158 bits (174), Expect = 2e-33 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| || |||||||| ||||||||| ||| || || || || |||||||| Sbjct 4243 ATGAGTCTAGTAGTTTGGAACAGCTGCTCGTCATCCCACTCCGGGTGCTCCTGTTTCAGG 4184 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | ||||| |||| |||||||||||| ||||| || || ||||||||||| | || || Sbjct 4183 ATGTCGCAGACCCGGTTGTGTTCCCTCAGCCATATCGTAGCGTACATCATCAAGCCCGGG 4124 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| || || |||| || || || | | ||| || ||| ||||| | ||||| Sbjct 4123 ACCAAACCGAACACCTCCTGCCCCACGGAAAACTGCAAGTGTTCAGGCACATGAGGAGGG 4064 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || ||||||||||| || |||||||| Sbjct 4063 TAGATCATCTCTGCCTGAGTGTCCTTCACAGTTGGTGGATACATTTCTCCACCAATCATC 4004 Query 9484 TG 9485 || Sbjct 4003 TG 4002 Score = 149 bits (164), Expect = 9e-31 Identities = 211/297 (71%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || |||||| | |||| || ||| | | || Sbjct 7039 GGAAGGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 6980 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || |||| ||||| | ||| || |||||||| |||||||||||| | |||| Sbjct 6979 TGTTGATTATTTCGAAGCCCACTTTTCCACCAAAGGTGCTCGGCTTCCAGTACTCAGGGG 6920 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| | || |||| || ||||| || |||||||| || || | ||| | || Sbjct 6919 AGCAGATGGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCTATCTCCACCATCG 6860 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || |||||||| || || || |||||||| | || || | |||||||||| Sbjct 6859 TCTCGCCAAAGATGGCACCTGGCCGTGGTTTTTCCACGAGGAGGCCTGGATACAGCTCCA 6800 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || | ||||| ||||| | ||||| || || || || |||||||||| Sbjct 6799 TCGCATCAATATCTCCATAAAGCTCTTCCAGTTCAGCCGCCATTTCTTTTTCTCCTG 6743 >seq6541 Length=23092 Score = 100 bits (110), Expect = 4e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 |||| |||||||| ||||| ||||||||| | |||||||||||| ||| ||| || | Sbjct 12981 CTCCACCGAAGGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCCAGAAGCC 13040 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 |||| ||||| || ||||| || | ||| | ||||| || || || || | ||||| Sbjct 13041 CTTTCAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCTCCAAAAATACCATTGGGTT 13100 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 |||| || || | || || || || | ||||| ||| || | |||||| || || Sbjct 13101 GGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATACAG 13158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716342843276480