Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq10106 118 8e-22 seq7236 95.1 9e-15 >seq10106 Length=330250 Score = 118 bits (130), Expect = 8e-22 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| ||||||| || | |||||||||| |||||||||| || |||||||| || Sbjct 248822 CTTGAGTTCTCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGGCGATTCTTCTCCGG 248763 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| || ||||| || ||||||||||| |||||| |||||||||| ||| Sbjct 248762 AATGGAAAACCAGGTTTTTTTACCCATTATCACTGCATTCTGTTTACCTG 248713 >seq7236 Length=503087 Score = 95.1 bits (104), Expect = 9e-15 Identities = 133/183 (73%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 ||||||||||||| || || ||||||||||| || ||||| || ||||| | ||| || | Sbjct 198500 CTTTATATTCTGCCCCAAAGTGCCTCCACTGGAAACCATAAACGGGTCCCAAATCACCCT 198441 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||||| | ||||| | ||||| | || | || ||||| |||||||||| Sbjct 198440 CTTCTCTGTTGCAGAAACCCTGCTTATCCAGGAACTCACGTGAGCCATTGGCATCCCAAA 198381 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACA-AC 102211 | | ||| || ||| || || |||||| | ||||| || || | ||| |||| || Sbjct 198380 TCTTCACACCCTTTGCAGAGAGTTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAGAC 198323 Query 102212 AGT 102214 ||| Sbjct 198322 AGT 198320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360887911569014