Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq11938 134 2e-26 >seq11938 Length=220640 Score = 134 bits (148), Expect = 2e-26 Identities = 185/257 (72%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | || | | |||||||||||||||||||| | ||| || ||||| Sbjct 115204 GGGCACGCCGTCGGGGCCGATGAGGAACTTCTCGAAGTTCCAGGAGATGTCATTCCGGCA 115145 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 ||| || |||||| || ||| |||| | ||| |||| | | |||||| || Sbjct 115144 CACGGGCGACCAGATGATATACTGTGGGTTGGTCATCAGCGAGGTGGGGTCGTCATGTGG 115085 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACC 83296 ||||| |||||| ||||||| ||||||||| || || |||||| |||| || Sbjct 115084 GTAGGGCAGCGCCTCTTTGAGGAAGGTGAAGAGCGGGTGGGCGTCCTTGC--CGTTCACG 115027 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||| || || | ||||| |||| | |||| || || || |||||||| | | Sbjct 115026 TCGCACTTCTCAAACAGGGTGAAGTTGGGCTTGTAGCCATTGCCGGGGCGGACGTGTTCC 114967 Query 83357 AGGGAAGGCAAGATCTC 83373 || || | | |||||| Sbjct 114966 AGCGAGCGGAGGATCTC 114950 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| || || || || ||||| || ||||| || | || || Sbjct 114672 CCTGGTGCCCGAACTGGTTGCAGGGAAAGCCGAGCACCACGAGCCCGCGCGGGCCGTAGC 114613 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGAC 83506 |||||||||||||||| | ||| | | | || ||| ||||| | |||||||| ||| Sbjct 114612 GCCGCTGCAGCTCGTTGAACTGCGCGAAGTCGCGGGCCGTGGTGCCTCAGAGCGAC 114557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608168871760560