Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq8606 150 2e-31 seq5912 149 6e-31 seq11853 129 6e-25 seq11103 87.8 2e-12 >seq8606 Length=302679 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 263632 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGT 263691 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| |||||||||||| |||| ||| Sbjct 263692 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 263751 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 263752 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 263811 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| ||||| || ||| ||||| ||||||| ||| Sbjct 263812 ATCCAGAAGGAATCCACCCTGCACCTCGTGCTGCGCCTGAGGGGTGGC 263859 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 263404 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGT 263463 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| |||||||||||| |||| ||| Sbjct 263464 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 263523 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||| |||||||||| Sbjct 263524 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 263583 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| ||||| || ||| |||| |||| || || Sbjct 263584 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTGAGAGGTGG 263630 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| |||||||| | || ||||| | Sbjct 263173 AACATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTCGAGCCT 263232 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||||| | ||| | |||| || || | ||||| || ||||||||| |||| Sbjct 263233 AGCGACACTATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGAT 263292 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| |||| |||||||| ||||||| Sbjct 263293 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGACTAC 263352 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||| |||| ||||| || ||| |||| |||| || || Sbjct 263353 AACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTGAGAGGTGG 263402 >seq5912 Length=13300 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || |||||||||||| | || || || ||| Sbjct 9113 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAAACCATCACCCTGGAAGTTGAGCCCAGT 9054 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || |||| || || || ||||||||| | || || Sbjct 9053 GACACCATTGAGAACG-TGAAGGCCAAGATTCAGGATAAGGAAGGCATCCCCCCAGATCA 8995 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 8994 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGTCCGACTACAA 8935 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| ||||| || ||| ||||| ||||||| ||| Sbjct 8934 TATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGC 8886 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || |||||||||||| | || || || ||| Sbjct 8885 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAAACCATCACCCTGGAAGTTGAGCCCAGT 8826 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || || ||||||||| | || || Sbjct 8825 GACACCATTGAGAACG-TGAAGGCCAAGATCCAAGATAAGGAAGGCATCCCCCCAGATCA 8767 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||||| |||||||| Sbjct 8766 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGTCTGACTACAA 8707 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || ||| ||||| ||||||| || Sbjct 8706 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGG 8659 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||| || || || || || | || || || ||||||||| | || || || | Sbjct 9345 AAAAATGCAGATTTTTGTGAAGACTTTGACAGGGAAGACCATCACCTTGGAGGTTGAGCC 9286 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | | |||||| || || | || || || || |||||| | || Sbjct 9285 TAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGA 9226 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| | || |||| || ||||| |||||||| || | |||||||| |||||| Sbjct 9225 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTA 9166 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| ||||| || ||| ||||| ||||||| ||| Sbjct 9165 CAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGC 9114 >seq11853 Length=150111 Score = 129 bits (142), Expect = 6e-25 Identities = 97/114 (85%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| |||||||| || || ||||| || |||||||| || |||| ||| Sbjct 136754 GAGCCGCTGCTGCGGGAGAACCCGCGTCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 136695 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 |||||| |||||||| ||||||||||| || |||||||||| |||||||||| Sbjct 136694 GTGTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTG 136641 >seq11103 Length=185963 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || || |||||||||| || || || || ||||||| Sbjct 141417 TGGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTTCCGGTTCCTTTGCTGCTATATTTT 141358 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| ||||||||| | | | Sbjct 141357 GGCTGAAGAAGAGAGGCCTGATGCCTGGACTGACTTTCTCCAATGAGCTCATCAGCCGAG 141298 Query 117162 ACGAGG 117167 | |||| Sbjct 141297 ATGAGG 141292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514687790036640