Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq7236 104 2e-17 >seq7236 Length=503087 Score = 104 bits (114), Expect = 2e-17 Identities = 115/153 (75%), Gaps = 8/153 (5%) Strand=Plus/Minus Query 97397 CTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTT 97456 ||| ||||||||| ||||| |||||||| ||||| |||||||| ||||| | || || | Sbjct 198500 CTTTATATTCTGCCCCAAAGTGCCTCCACTGGAAACCATAAACGGGTCCCAAATCACCCT 198441 Query 97457 CTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTA----GATCCATTTGCATCC 97512 ||||||| | |||||||| ||||||| | ||| || || ||||| |||||| Sbjct 198440 CTTCTCTGTTGCAGAAACCCTGCTTATCCA----GGAACTCACGTGAGCCATTGGCATCC 198385 Query 97513 CAAATGTGCACACCAGATGCTGCAAGCTCTTTG 97545 ||||| | |||||| ||| | || |||||| Sbjct 198384 CAAATCTTCACACCCTTTGCAGAGAGTTCTTTG 198352 Score = 95.1 bits (104), Expect = 8e-15 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| ||||| | || | || |||||||| ||||| || || ||||| || Sbjct 201434 GTGACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAGGGCACTCCC 201375 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATC-ACACACATA 97235 ||||||||||| | || || ||||| | || ||||| | | |||| ||| ||||| Sbjct 201374 AGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAGGACAATTCACCATTTACA-ACATA 201316 Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 |||||||| | |||| || || ||||| ||||| Sbjct 201315 AAACTGACAAAGAGCATGGCAAGGAGGCAAAGCCAT 201280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346435260354980