Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq11103 109 5e-19 seq11853 87.8 2e-12 >seq11103 Length=185963 Score = 109 bits (120), Expect = 5e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 16268 CTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAAT 16327 || || | ||| || || || || || || ||||| || |||| || || | ||||||| Sbjct 141303 CTGATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTCAGCCAAAAT 141362 Query 16328 ATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGC 16387 ||||| ||||| ||||| |||||||| || ||||||||||| ||||| ||||||| || | Sbjct 141363 ATAGCAGCAAAGGAACCGGAAAAGAAGATTCCTTCAACTGCAGCAAAGGCAACCACTCTC 141422 Query 16388 TCACC 16392 ||||| Sbjct 141423 TCACC 141427 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 ||||||| ||| |||| || ||||| || | | | || |||||| | | || Sbjct 136609 AAAAATCTGCATCCAGAGTGAAAACATTGTCCATAGTTTCTGCCATAACAGCAAAGCGTT 136668 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 |||| || ||| | ||| ||||||||||||||||||||||| | |||||||| |||| Sbjct 136669 GATACTCCGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTCCA 136728 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | |||||||||||||||| || Sbjct 136729 TGAAATCAAAAGGATTTTCTG 136749 >seq11853 Length=150111 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 |||||||| ||| ||| | |||||||||| |||| ||| |||||||| || ||||| Sbjct 132484 TTTGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTCGTTTTG 132543 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||| | || || |||||||| || ||||||||||| Sbjct 132544 CCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 132581 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | || || ||||| || || || ||||||| ||||| ||| || Sbjct 133721 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 133780 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | ||||| || ||||||||||| || || || ||||| ||||| || Sbjct 133781 AGCCAAAAGATTGATGCAAAGGAGCCAGAAAAGAAGATTCCCTCTACTGCTGCAAAAGCT 133840 Query 16379 AC 16380 || Sbjct 133841 AC 133842 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 |||||| |||||||| | ||| || || ||||||||||| || |||||||||||| | Sbjct 132967 ATCCCAGTTCCAACATAAGTCTGTCTGCTACAAATTCTATGTATTGTTTCATTAAAGTGC 133026 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 ||||||| || || | ||| ||||| | ||| || || || || Sbjct 133027 AGTTCATGCCAATCAGTTTTACAGGCAGTGCCTCCGTCAAGAA 133069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462034953560400