Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq5238 372 2e-98 seq4230 89.7 4e-13 seq32222 87.8 1e-12 >seq5238 Length=836009 Score = 372 bits (412), Expect = 2e-98 Identities = 587/838 (70%), Gaps = 2/838 (0%) Strand=Plus/Minus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTC 107687 ||||| ||| | || || ||||||| | || ||||||| || ||||| ||||| Sbjct 525029 TACCTGAACCTGACAAGGGACTGTGGGTACTACAAGGCCATGCGGCGCTTCATCGAGTTC 524970 Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || |||| || ||| || |||||||| |||||||| ||||| |||| || || Sbjct 524969 CCGTTGAGCCTGGAGGAGGCTGAGTTCCCCATCGCCTACTCCATGGTCATCCACGACAAA 524910 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | ||||| ||||| |||||| || | || ||||| |||||| | ||||| || Sbjct 524909 ATTGAGATGTTTGAGCGGCTCCTGCGATCCCTCTACGCCCCCCAGAACCTCTACTGCATC 524850 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||| || ||| | ||||| || ||||| ||||| Sbjct 524849 CATGTTGACAGCAAGTCGACAGCCACCTTCCAGGAGGCCGTGCGAGCCATCGCCGCCTGC 524790 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 |||||||||||||| |||||||| ||| ||||| ||||||||||||||| | Sbjct 524789 TTCCCCAATGTCTTTGTGGCCAGTCGCCTGGAGAATGTGGTCTATGCCTCCTGGTCCCGG 524730 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTAC 107987 |||| |||||||||||||| ||| | ||| ||||||||||| | | || ||| ||| Sbjct 524729 CTGCAGGCTGACCTGAACTGCATGCAGGACCTGCTCCAGAGCCCCATACCCTGGCGCTAC 524670 Query 107988 TTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCC 108047 | || || || || || || ||||||||||| |||||||| || ||||| |||| || Sbjct 524669 CTCCTCAACACCTGTGGCACTGACTTCCCCATCAAGACCAACGCAGAGATCGTCCGCACC 524610 Query 108048 CTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTC-Caaaaa 108106 || ||| || || |||| |||||||||||||||| | || || || | ||| | Sbjct 524609 CTGAAGCTGCTGCAGGGGCAGAACAGTATGGAGTCCACGAAGCCCTC-GATCCTCAAGCA 524551 Query 108107 aaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAA 108166 | |||||| | |||| | | ||||||||| || | | | || || | | ||| Sbjct 524550 GCAGCGCTGGCAGTACCACCACGAGGTGACACACTCCATCTTCCGCACTGCTACAAAGAA 524491 Query 108167 GGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCG 108226 || || || || | | || ||||||||||| ||||| || || |||||||| || Sbjct 524490 GGCGCCGCCACCACACGGCTACCCTATGTTCACAGGCAATGCATACTTCGTGGCCTCACG 524431 Query 108227 AGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAA 108286 |||||||| | || |||| | | || | | ||| | |||| |||| || Sbjct 524430 GGCCTTTGTGGAGCACCTCTTCCAGAGTCCCACAGTCCAGCAGTTCCTTGAGTGGGCTAA 524371 Query 108287 AGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCC 108346 |||||||| ||||| ||||||||| ||||||||||||| | || || | |||| Sbjct 524370 GGACACCTACAGCCCTGACGAACACGTCTGGGCCACCCTCAACCGCATGCCTGGCGTGCC 524311 Query 108347 TGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCT 108406 || | || || |||| ||||| | | |||| ||||||| ||| | ||| | || Sbjct 524310 GGGGGCCGTGCCATACCACAACAAGTTTGAGCTCTCGGACATGAATGCTGTGGCCCGCCT 524251 Query 108407 CGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGC 108464 |||||||||||||||| || || || |||||| ||| || || || | |||||| Sbjct 524250 GGTCAAGTGGCAGTACCTGGAAGGTGACATCAGCAAGGGTGCCCCCTACCCGCCCTGC 524193 >seq4230 Length=17431 Score = 89.7 bits (98), Expect = 4e-13 Identities = 228/345 (66%), Gaps = 4/345 (1%) Strand=Plus/Minus Query 107711 CTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCT 107770 ||||||| | |||||| ||| | | || || || | || | ||| || ||||| | Sbjct 423 CTTCCCCCTCGCCTACATCATGACGCTGCACAAGGAGTTCGAGACCTTCGAGCGGCTCTT 364 Query 107771 GCGAGCCGTGTA--TGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCA 107828 || || || || |||||| ||||| | ||||| ||||||||||| |||| | || Sbjct 363 CCGGGCGGTCTACATGCCCC--AGAACGTCTACTGCGTCCACGTGGACCAGAAGGCGCCG 306 Query 107829 GAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCC 107888 | | ||| | ||||| || | | | | |||||||||||| | |||| ||||| Sbjct 305 GCCGCCTTCCAGGAGGCCGTGTGGCGCCTGCTGCGCTGCTTCCCCAACGCCTTCCTGGCC 246 Query 107889 AGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGT 107948 | | || | ||||| || | | | || | ||| || ||||| |||| Sbjct 245 TCCAGGACGGAGCGCGTGGTCTACGGCGGCATCTCGCGCCTGCGCGCCGACCTCCACTGC 186 Query 107949 ATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACA 108008 ||| ||| |||| | | ||||| ||||||||| | || || || |||||| Sbjct 185 ATGCGCGACCTGCTGGCCTCCGCCGTGCCCTGGAAGTACCTGCTCAACACCTGCGGGCAG 126 Query 108009 GACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAG 108053 ||||||||| | |||||||| |||||| |||| | |||||| Sbjct 125 GACTTCCCCTTGAAGACCAACCGCGAGATCGTCCAGCAGCTCAAG 81 >seq32222 Length=1043863 Score = 87.8 bits (96), Expect = 1e-12 Identities = 190/282 (67%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| |||||||| || ||||| || || | || ||||| ||| | ||| | | Sbjct 502524 GAGTGGGCAAAAGACACTTACAGCCCTGATGAGTATCTGTGGGCAACCATCCAGAGAA-T 502582 Query 108336 CCGTG-GATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGC 108394 || || | | || || | ||| | | ||||| | | | || ||||||| || Sbjct 502583 CCCTGAGGTCCCAGGGGCAGTTTCGTCCAGTAACAAGTTTGATGTTTCTGACATGAACGC 502642 Query 108395 CATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTA 108454 |||||||| | || |||||||||||| ||| || || || || || ||||| || Sbjct 502643 GCTCGCCAGGTTTGTGAAGTGGCAGTACTTCGAAGGTGACGTGTCCAAAGGTGCGCCCTA 502702 Query 108455 TGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTA 108514 |||| ||| ||| || || | || ||||||||| || || || ||| || | Sbjct 502703 CCCACCGTGCAGTGGGATTCACGTTCGCTCCGTCTGCATTTTTGGAGCAGGAGACTTGAA 502762 Query 108515 CTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 |||||| || | ||||| ||| |||| || || ||||| || Sbjct 502763 CTGGATGCTGCGAAACCACCACTTCTTTGCTAATAAGTTCGA 502804 Score = 84.2 bits (92), Expect = 2e-11 Identities = 180/269 (67%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || |||| ||||| || ||||| || | || Sbjct 501933 CCCCTCAGCAATGAAGAAGCAGAATTTCCACTTGCTTACTCAATAGTGGTTTATCACAAA 501992 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | ||||| |||||||| | ||||| | Sbjct 501993 ATTGAGATGCTTGATAGACTCCTAAGATCAATCTATGCTCCTCAGAATTTTTACTGCATT 502052 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||||||||| | || | || || |||| || |||| || Sbjct 502053 CATGTTGACAAAAAGTCCCCAGAATCCTTTTTTGCTGCTGTGAAGGGGATAGTTTCTTGT 502112 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || | || |||||| || || |||||||| ||| ||| Sbjct 502113 TTTGATAATGTCTTTATTTCTAGCCAGTTGGAAAGTGTTGTATATGCCTCATGGAGCAGG 502172 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGA 107956 |||||||| ||| | ||||| ||| |||| Sbjct 502173 GTGCAAGCAGACATTAACTGCATGAAAGA 502201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347918567181636