Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq8606 109 4e-19 seq5912 105 5e-18 >seq8606 Length=302679 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| || || ||||||||||||| || || | ||| Sbjct 263387 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCT 263328 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || |||||| ||| | ||||||||| || Sbjct 263327 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCTTCCTTGTCC 263268 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | ||| |||||| | |||||| |||| |||||| | Sbjct 263267 TGGATCTTGGCCTTCACATTTTCAATAGTGTCGCTAGGCTCGACCTCAAGAGTGATGGTC 263208 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331 |||||||||| || || ||||| || ||||| || || Sbjct 263207 TTGCCGGTCAGGGTCTTCACAAAGATCTGCATGTTGAA 263170 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| || || ||||||||||||| || || | |||| Sbjct 263615 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 263556 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || |||||| ||| | ||| ||||| || Sbjct 263555 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 263496 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| ||||||| ||| || || | ||||||| | Sbjct 263495 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTC 263436 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || ||||| || ||||| Sbjct 263435 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 263404 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || ||||| || || ||||||||||| | || || | |||| Sbjct 263843 AGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 263784 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || |||||| ||| | ||| ||||| || Sbjct 263783 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 263724 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| ||||||| ||| || || | ||||||| | Sbjct 263723 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTC 263664 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || ||||| || ||||| Sbjct 263663 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 263632 >seq5912 Length=13300 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||||| || || | |||| Sbjct 9130 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 9189 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || ||||| ||| | ||||||||||| Sbjct 9190 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 9249 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| ||||| || | ||||||| | Sbjct 9250 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCAACCTCCAAGGTGATGGTC 9309 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || || ||||| || || |||||||| ||||||||| Sbjct 9310 TTCCCTGTCAAAGTCTTCACAAAAATCTGCATTTTT 9345 Score = 95.1 bits (104), Expect = 9e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 18094 GTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153 |||| || |||| || | || |||| ||| || || || || || || |||||||||| Sbjct 8655 GTTA-CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGT 8713 Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213 | | || || | ||| |||| || ||||| ||| |||| || || || ||||| Sbjct 8714 CAGACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTG 8773 Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCT 18273 ||| | |||||||||||| || | ||| || | ||| ||||||| ||||| Sbjct 8774 GGGGGATGCCTTCCTTATCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCT 8833 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||| | ||||||| |||| || |||| || || ||||| || ||||| Sbjct 8834 CAACTTCCAGGGTGATGGTTTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 8885 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || || |||||||||| || || | ||| Sbjct 8902 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGTCCATCC 8961 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| || |||| || || || ||||| ||| | |||||||||||| Sbjct 8962 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 9021 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | ||| || | ||| ||||||| |||||| ||| | ||||||| || Sbjct 9022 TGAATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTT 9081 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || |||| || || ||||| || ||||| Sbjct 9082 TTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 9113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378962516736930