Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq10844 136 4e-27 seq8606 104 2e-17 seq5912 91.5 1e-13 >seq10844 Length=18256 Score = 136 bits (150), Expect = 4e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 ||||||||| ||| |||||||| || || || || || || ||||| ||||| || || Sbjct 6804 CACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGT 6863 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 |||| || ||||||||| || || ||||| || ||||||||||||||||| || || Sbjct 6864 CCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGT 6923 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||||||||| |||||||||||||||||| ||||| Sbjct 6924 GCCCGTCTCCGTCTGCGACTCGATGATCGCGTACCACA 6961 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 ||||||| || |||| || ||||| || ||||| || || |||| || || | ||| | Sbjct 8141 TTTCAACTCGCTTCATGAAGAGATCGGGGATCCAGAGGGCAAAGAAGAGGTCTCTGGCTC 8200 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 || ||||||||| || || ||||| || || || | ||| || || | |||| ||||| Sbjct 8201 GCTGCTCCTCTTTCCCAGTATTCTTCTTTAAGTCAAGAAATTCAAAAATGTCCAAATGCC 8260 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 ||||||||||||| | |||||| || || ||||||| || Sbjct 8261 ACGGCTCGAGGTAGATGGCAAAGGCCCCGGGTCTCTGAT 8299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/185 (70%), Gaps = 8/185 (4%) Strand=Plus/Plus Query 22697 CCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCG 22756 || ||||||||||| || || || | | | |||||| || ||||| || |||| || Sbjct 4622 CCCTCGTACGTTTCATAGGGCCCTTGTTCCTGGGCAAGCTCACAGCTGGCTTCCAGAGCA 4681 Query 22757 CCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGC----GGCGGCGACGCTTTC 22812 |||||||| || ||||||||||| | || ||||| ||| ||| || ||| || Sbjct 4682 CCGTAATAGATGGTCTCGAAGATCTGCTGGTTCA----GGCGCTGGGCCTCGGGGCTCTC 4737 Query 22813 GTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGG 22872 | | || | | ||| | | ||| ||||| |||| ||||| ||||| || |||| || Sbjct 4738 GAAGGGGAATCTCATGAGGATGAAGGCGTCTGCCAGGCCCTGCACGCCGATGCCGACGGG 4797 Query 22873 TCGGT 22877 |||| Sbjct 4798 CCGGT 4802 >seq8606 Length=302679 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| ||||| ||||| || ||||| | || || || || Sbjct 263173 AACATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTCGAGCCT 263232 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | | |||| || || | || ||||||||||||| | || || || Sbjct 263233 AGCGACACTATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGAT 263292 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || |||||||| ||| |||||||| || || ||| || Sbjct 263293 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGACTAC 263352 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| || || || ||||| || | ||||| || || Sbjct 263353 AACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTGAGAGGTGG 263402 >seq5912 Length=13300 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| |||||||| ||||| |||||| | || ||||| || Sbjct 9114 CATGCAGATCTTTGTGAAGACCCTGACAGGGAAAACCATCACCCTGGAAGTTGAGCCCAG 9055 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||| ||||||||| | || || || || Sbjct 9054 TGACACCATTGAGAACGTGAAGGCCAAGATTCAGGATAAGGAAGGCATCCCCCCAGATCA 8995 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | || || ||||||||||| ||| |||| || | | | || || ||| || | Sbjct 8994 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGA-TGGACGCACCCTGTCCGACTACA 8936 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || || || || || || || || ||||| || | |||||||| || Sbjct 8935 ATATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGG 8887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445306625390880