Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq11103 120 4e-22 seq11853 111 2e-19 seq10844 93.3 5e-14 >seq11103 Length=185963 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||| || || | || || || || || ||||| ||||| ||||| | ||| | Sbjct 141292 CCTCATCTCGGCTGATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 141351 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || |||||||||||||||||||| ||||||||||||| Sbjct 141352 TCAGCCAAAATATAGCAGCAAAGGAACCGGAAAAGAAGATTCCTTCAACTGCAGCAAAGG 141411 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 141412 CAACCACTCTCTCACC 141427 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 34028 |||||||| || |||||||| |||||||||||||| |||| ||||| ||||| ||| Sbjct 144653 TTTTCATTTACAATTCCATCGCTGGCTGCAAAAAAGGCCAGAACATGAGAGATAAAGTAT 144712 Query 34029 TTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| |||| | |||| || ||||| Sbjct 144713 TTTTCATCTGCTTTTAGCTTGTTCCA 144738 >seq11853 Length=150111 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | ||| |||||||| |||||||| ||||||| || | || | Sbjct 133719 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 133778 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || || || || || || |||||||||||||| |||||||| ||||| | Sbjct 133779 TCAGCCAAAAGATTGATGCAAAGGAGCCAGAAAAGAAGATTCCCTCTACTGCTGCAAAAG 133838 Query 33724 C 33724 | Sbjct 133839 C 133839 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | || |||||||| || || || || || || || ||||| ||| Sbjct 132487 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTCGTTTTGCCT 132546 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || || ||||||||||| ||||| ||||| Sbjct 132547 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 132581 >seq10844 Length=18256 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| || | ||| || ||||||||||| ||||| || | ||| || || || || || | Sbjct 13957 CACTGAACACTTTCTTGGTTTCCTTGTGCAGATTGGACACGGCGATCCTCGCCGCCAGGA 14016 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | || || || || |||| || || ||| || || |||| || ||||||||||||| Sbjct 14017 TAGCGTAGTCAGGGTGTTTGGTGGTCAGAGTCGCAGCCGTTTCAGCAGCCAGAGTGTCCA 14076 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 ||| || || || || ||| | || | || ||||| || ||||| Sbjct 14077 GTTCCACTGTGGTGACACCACTGTAGAGCCCCTGAATCACTTTCAT 14122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629167990381920