Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11103 123 4e-23 seq11853 120 4e-22 seq10844 87.8 3e-12 >seq11103 Length=185963 Score = 123 bits (136), Expect = 4e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||| || || || || ||||| || || ||||| ||||| ||||| | ||| | Sbjct 141292 CCTCATCTCGGCTGATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 141351 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | ||||| || || ||||||||||||||||| ||||| ||||||| Sbjct 141352 TCAGCCAAAATATAGCAGCAAAGGAACCGGAAAAGAAGATTCCTTCAACTGCAGCAAAGG 141411 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 141412 CAACCACTCTCTCACC 141427 >seq11853 Length=150111 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || ||||| || ||||| |||||||| ||||||| || | || | Sbjct 133719 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 133778 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || || ||||| || ||||||||||||||||| |||||||| ||||| | Sbjct 133779 TCAGCCAAAAGATTGATGCAAAGGAGCCAGAAAAGAAGATTCCCTCTACTGCTGCAAAAG 133838 Query 50102 CAAC 50105 | || Sbjct 133839 CTAC 133842 >seq10844 Length=18256 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| || ||||||||||| ||||| || ||||| || || || || | | Sbjct 13957 CACTGAACACTTTCTTGGTTTCCTTGTGCAGATTGGACACGGCGATCCTCGCCGCCAGGA 14016 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | || || || || |||| || || ||| || || |||| || ||||||||||||| Sbjct 14017 TAGCGTAGTCAGGGTGTTTGGTGGTCAGAGTCGCAGCCGTTTCAGCAGCCAGAGTGTCCA 14076 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 ||| || || || || ||| | || | || || || || ||||| Sbjct 14077 GTTCCACTGTGGTGACACCACTGTAGAGCCCCTGAATCACTTTCAT 14122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717527959602960