Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq5912 93.3 3e-14 >seq5912 Length=13300 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || | ||| | | ||||| || | ||| |||||| || | ||||| ||||| Sbjct 9114 GCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 9173 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || ||| | || |||| || ||||| ||||| |||| | ||| ||||| | || Sbjct 9174 CAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGG 9233 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || |||| | ||||| | ||| ||||| | || ||| || Sbjct 9234 GATACCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCAAC 9293 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || | ||| ||||||||||| |||||||| Sbjct 9294 CTCCAAGGTGATGGTCTTCCCTGTCAAAGTCTTCACAAAAATCTGCATTTT 9344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380986079713812