Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1116 150 4e-31 seq5912 141 2e-28 seq11853 107 4e-18 seq3229 87.8 4e-12 >seq1116 Length=165511 Score = 150 bits (166), Expect = 4e-31 Identities = 131/163 (80%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| |||| |||||||| ||||| | ||||| | || |||||| Sbjct 11254 GCTTTATGGTGGTATTATGTCTCCAAAGGAATCGAATATTTGGATACAGTATTTTTCATC 11195 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 11194 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 11135 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || || | ||||| ||||| || ||| | ||||| ||||||| Sbjct 11134 ACCCTGTGGTGGATTGGTATCAAGTGGGTTGCAGGTGGACAAG 11092 >seq5912 Length=13300 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || ||||| Sbjct 9112 ATGCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 9171 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || |||||||| ||||| || Sbjct 9172 GACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGG 9231 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| || || ||||| || | ||| || ||||| || Sbjct 9232 GGGATACCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCA 9291 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| | || || ||||| || || | || || ||||| ||||||||||| Sbjct 9292 ACCTCCAAGGTGATGGTCTTCCCTGTCAAAGTCTTCACAAAAATCTGCATTTT 9344 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| ||||| ||||| Sbjct 8884 ATGCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCG 8943 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || || || || ||||| || || |||||||| ||||| || Sbjct 8944 GACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCTGGG 9003 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||||||||| || || || || || | ||| || || || || Sbjct 9004 GGGATGCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCA 9063 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || || || || || ||||| |||||||| Sbjct 9064 ACTTCCAGGGTGATGGTTTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 9113 >seq11853 Length=150111 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || ||||| || || |||||||| || || ||||| Sbjct 133854 GGAGAACGTGTAGTAGCTTTTGCAGCAGTAGAGGGAATCTTCTTTTCTGGCTCCTTTGCA 133795 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | ||||||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| | Sbjct 133794 TCAATCTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTC 133735 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 133734 ATCAGTAGAGATGA 133721 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| |||| ||| ||| |||||||| | ||||| | ||||| || || | Sbjct 135873 TCTAGGTGGAGCGGTTCAGTCCAGAAGTACAGATCACAGAAGCGCGTTGTTTCTATGGCT 135814 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 ||||||| || || ||||| || |||||||| ||||||||||| |||| || || || | Sbjct 135813 TCCAGATTGCCATGGAAAACATACATTCAGAAATGTACAGTCTTCTAATTGACACATACA 135754 Query 269016 T 269016 | Sbjct 135753 T 135753 >seq3229 Length=117486 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 238626 GGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGA 238685 ||||| |||||| | ||| | || ||||| ||||| |||||||| || || ||||| | Sbjct 48448 GGCAAGATGCATGGCTTCCTGCGGATGTACTGGGCCAAAAAGATCCTGGAGTGGACACGC 48507 Query 238686 TCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGAACGATAAATACGAACTCGACGGT 238745 || || |||| ||||| | | || || || || ||| ||||| || ||||| Sbjct 48508 TCCCCTGAGGAGGCTCTGCAGTTTGCCATCTACCTCAATGATCGCTACGAGCTGGACGGG 48567 Query 238746 ACGGATCCTAACGGATACGTAGG 238768 | |||||| |||||||||||||| Sbjct 48568 AGGGATCCCAACGGATACGTAGG 48590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150181129377912