Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq5550 152 7e-32 seq11145 104 3e-17 >seq5550 Length=243327 Score = 152 bits (168), Expect = 7e-32 Identities = 225/318 (71%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 ||||||| | || || || ||||| |||||| |||| || ||| | | || Sbjct 176428 GGAACGCTGTGAAGGGGCAGCCTTTCACGTTGTGGCAGATGAGCTTCTGCAGGGAGGCTG 176487 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| || || ||||||||||||||||| | |||| Sbjct 176488 TATTGATTATTTCAAAGCCCACTTTTCCCCCAAAAGTGCTGGGTTTCCAGTACTCGGGGG 176547 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || || || ||||| ||||| || || | || | || Sbjct 176548 AGCAGATAGCATTGCCCATCAGTCCCTTCAGGGAGAACGGCGCTCCGATTTCCACCATCG 176607 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || ||||||||| || || ||||| || |||| || || | |||| ||||| Sbjct 176608 TTTCGCCAAAGATGGCGCCTGGTCGAGGCTTCTCTACCAGGAGGCCTGGATACAGCTCCA 176667 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-- 8976 ||| || || ||||| ||||| || ||||| || || ||||| ||||||||||| Sbjct 176668 TAGCGTCAATATCTCCATAAAGCTCCTCCAGTTCTGCTGCCATTTCTTTTTCTCCTGTAA 176727 Query 8977 TTTATTAATAAAAATAAA 8994 || | | |||||||||| Sbjct 176728 TTGGTGAGTAAAAATAAA 176745 Score = 87.8 bits (96), Expect = 3e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 10025 TGTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCT 10084 || |||||||||||| || || |||| |||||| | || ||| || ||| ||| | Sbjct 179628 TGATCTTACCCCATGGCCAAGAGCTTTCGTGAAGCCAGGTCCTTTCGTGTGATCTGTCTT 179687 Query 10085 AAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGG 10144 ||| ||||| || ||||| || || | || || | ||||| | ||| ||||| ||||| Sbjct 179688 AAAGAACTGATGAGTGAAGTGCTGAGCGAAGAATGTGAACATCACGTTTGTGCCTTGGGG 179747 Query 10145 ATCGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || ||| | || ||||||| || | | ||| ||||||| Sbjct 179748 GTCAGGAATAAACTTCCTCCGCAGCAAAAATTTCTCCACAA 179788 Score = 86.0 bits (94), Expect = 9e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || ||||| || || | || || || || |||||| ||| Sbjct 180158 ACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCCACTGGTGGCAGGCTCCTTGTGTA 180217 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 ||||||||||||||| | |||||||||||| ||| | ||||| ||||| | || Sbjct 180218 ATAGGAGAGATTGGAATATGCTTCCCAGCTTTTGTAGTTATAGTCACTATTGTAAGTTGG 180277 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAA 10448 ||||| |||||||||| ||||| ||| | || |||| Sbjct 180278 GGGGCTATCAATCAAATGTGATCTTGCTGGAAGAGAAAAA 180317 >seq11145 Length=378118 Score = 104 bits (114), Expect = 3e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||| || || ||||||||||||||||| | |||| Sbjct 244723 TCTTAACTATCTCAAAGCCAGTTGCTCCACCAAATGTGCTGGGTTTCCAGTACTCGGGGG 244782 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | ||| || || | |||||| |||| || | ||| | |||| Sbjct 244783 AGCAGATGGGGTTTCCTAGGAGCCCCTTCAAGGAAAATGGAGATCCAATCTCCACCATGC 244842 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | |||||| |||| || || | || || || ||| ||||||| Sbjct 244843 TTTCCCCAAACATTGAATTGGGAAGGGGTTTCTCGAGCAGCAAGCCCACGTAAAACTCCA 244902 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 || || |||||||| || || Sbjct 244903 GGGCATCAATGTCTCCATAGAG 244924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707794009808160