Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11103 123 3e-23 seq11853 114 2e-20 seq10844 96.9 4e-15 >seq11103 Length=185963 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||| || || || || ||||| || || ||||| ||||| ||||| | ||| | Sbjct 141292 CCTCATCTCGGCTGATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 141351 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| | ||| || || || ||||||||||||||||| ||||||||||||| Sbjct 141352 TCAGCCAAAATATAGCAGCAAAGGAACCGGAAAAGAAGATTCCTTCAACTGCAGCAAAGG 141411 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | |||||| || Sbjct 141412 CAACCACTCTCTCACC 141427 >seq11853 Length=150111 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || ||||| || ||||| |||||||| ||||||| || | || | Sbjct 133719 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 133778 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||||| || || || || || ||||||||||||||||| |||||||| ||||| | Sbjct 133779 TCAGCCAAAAGATTGATGCAAAGGAGCCAGAAAAGAAGATTCCCTCTACTGCTGCAAAAG 133838 Query 33446 C 33446 | Sbjct 133839 C 133839 Score = 100 bits (110), Expect = 4e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 ||||||| || || || || | |||||| |||||||| ||||| |||||||| ||||| Sbjct 135747 TCTTTAATGTATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGCA 135806 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 ||||| || || |||||||| | || || || ||||||||||||| || || || ||| Sbjct 135807 ATCTGGAAGCCATAGAAACAACGCGCTTCTGTGATCTGTACTTCTGGACTGAACCGCTCC 135866 Query 33685 GCC 33687 || Sbjct 135867 ACC 135869 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| |||||||| | || |||||||| || || || || || || || ||||| ||| Sbjct 132487 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTCGTTTTGCCT 132546 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 |||| || || ||||||||||| ||||| ||||| Sbjct 132547 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 132581 >seq10844 Length=18256 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| || ||||||||||| ||||| || ||||| || || || || || | Sbjct 13957 CACTGAACACTTTCTTGGTTTCCTTGTGCAGATTGGACACGGCGATCCTCGCCGCCAGGA 14016 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 | || || || || |||| || || ||| || || |||| || ||||||||||||| Sbjct 14017 TAGCGTAGTCAGGGTGTTTGGTGGTCAGAGTCGCAGCCGTTTCAGCAGCCAGAGTGTCCA 14076 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||| || || || || ||| | || | || ||||| || ||||| Sbjct 14077 GTTCCACTGTGGTGACACCACTGTAGAGCCCCTGAATCACTTTCAT 14122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622304676684240