Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq8606 114 1e-20 seq5912 109 4e-19 >seq8606 Length=302679 Score = 114 bits (126), Expect = 1e-20 Identities = 167/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| |||| ||||| ||||| ||||| || ||||||||||||| Sbjct 263403 CCCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 263344 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| |||| |||| || ||||| ||| | || |||| ||| || ||| || Sbjct 263343 CAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGG 263284 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || || || |||||| | | | |||||||| ||||| Sbjct 263283 GATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACATTTTCAATAGTGTCGCTAGGCTCG 263226 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | |||||||| || |||||||| || || ||||| |||||||| ||| Sbjct 263225 ACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATGTTG 263172 Score = 109 bits (120), Expect = 4e-19 Identities = 166/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| |||| ||||| ||||| ||||| || ||||||||||||| Sbjct 263631 CCCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 263572 Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 || ||| |||||| |||| || ||||| ||| | || |||| ||| || ||| Sbjct 263571 CAGGGT----GCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCG 263516 Query 16824 CAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGG 16881 || | |||||| ||||| || || || |||||| | | | ||||| | ||| Sbjct 263515 GGGGGATGCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGG 263458 Query 16882 CTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || |||| ||||||||| || || ||||| || || ||||| |||||||| Sbjct 263457 TTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 263404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/209 (71%), Gaps = 12/209 (6%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC----TCCAA 16788 ||||| ||||| ||||| || ||||||||||| | || ||| |||||| |||| Sbjct 263834 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT----GCGTCCATCTTCCAG 263779 Query 16789 TTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCA 16846 || ||||| ||| | || |||| ||| || ||| || | |||||| ||||| || Sbjct 263778 CTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGAT 263719 Query 16847 ATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTT 16906 || || |||||| | | | ||||| | ||| || |||| ||||||||| || Sbjct 263718 CTTGGC--CTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTCTTG 263661 Query 16907 CCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || ||||| |||||||| Sbjct 263660 CCAGTCAGGGTCTTCACAAAGATCTGCAT 263632 >seq5912 Length=13300 Score = 109 bits (120), Expect = 4e-19 Identities = 169/237 (71%), Gaps = 7/237 (3%) Strand=Plus/Plus Query 16702 CATTTACC-CTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGT 16760 || ||||| | |||| || | ||| |||| ||||| ||||||||||| || ||||||| Sbjct 8653 CAGTTACCACCCCTC--AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGT 8710 Query 16761 AGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGT 16820 |||| | || ||| | ||||||| || ||||| ||| | || |||| ||| || | Sbjct 8711 AGTCAGACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGAT 8770 Query 16821 CCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878 | || | ||| || || || || || || |||||| | | | ||||| | Sbjct 8771 CTGGGGGGATGCCTTCCTTATCTTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCACT 8828 Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| ||||| |||||||||||| || ||||| || || ||||| |||||||| Sbjct 8829 GGGCTCAACTTCCAGGGTGATGGTTTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 8885 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || || |||||||||| || ||| | || Sbjct 8901 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGTCCATC 8960 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| || ||||| || | || |||| ||| || || || | ||| || || || Sbjct 8961 CTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATC 9020 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||| | |||||| | | | ||||| | |||||| ||||| ||||||||| Sbjct 9021 CTGAATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGT 9080 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| || ||||| || || ||||| |||||||| Sbjct 9081 TTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 9113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404680627556860