Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4289 95.1 2e-14 seq12586 91.5 3e-13 >seq4289 Length=50103 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 3660 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 3601 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 3600 TCCCGGCAGAGA 3589 >seq12586 Length=96826 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 32416 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 32475 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 32476 CCCCACGTTGGGC 32488 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 47301 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 47242 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 47241 CCCCACGTTGGGC 47229 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 51339 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 51398 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 51399 CCCCACGTTGGGC 51411 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 52197 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 52256 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 52257 CCCCACGTTGGGC 52269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026750160014274