Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq10844 136 7e-27 seq11853 89.7 1e-12 >seq10844 Length=18256 Score = 136 bits (150), Expect = 7e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTA 244381 || |||||||| || |||||||| || ||||| || | |||||| |||| | Sbjct 4604 CCTTTGCTGACAGGAGAACCCTCGTACGTTTCATAGGGCCCTTGTTCCTGGGCAAGCTCA 4663 Query 244382 CAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC-G 244440 ||||| | || || || |||| |||||||||||||||||| || ||||| | ||| | Sbjct 4664 CAGCTGGCTTCCAGAGCACCGTAATAGATGGTCTCGAAGATCTGCTGGTTCA-GGCGCTG 4722 Query 244441 GGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 ||||| | || |||||||| | ||| | |||||| |||| ||||| |||||||| Sbjct 4723 GGCCTCGGGGCTCTCGAAGGGGAATCTCATGAGGATGAAGGCGTCTGCCAGGCCCTGCAC 4782 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 ||||||||||| ||| | ||| ||| |||||||||| Sbjct 4783 GCCGATGCCGACGGGCCGGTGGCGCCGGTTGGAGCGC 4819 Score = 122 bits (134), Expect = 2e-22 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| ||| | ||||||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 6804 CACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGT 6863 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821 ||||||| ||| || ||| |||| |||||||| |||||||||||||||| |||| Sbjct 6864 CCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGG 6920 Score = 96.9 bits (106), Expect = 7e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| ||||||||||||||||| ||||||||| |||| | |||||| || Sbjct 8151 CTTCATGAAGAGATCGGGGATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGCTCCTC 8210 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 ||||| |||||| | | || | ||| ||||| | ||| | ||||| ||||| | Sbjct 8211 TTTCCCAGTATTCTTCTTTAAGTCAAGAAATTCAAAAATGTCCAAATGCCACGGCTCGAG 8270 Query 245128 GTAGACAGCGAGGGCGCCGGG 245148 ||||| || | ||| ||||| Sbjct 8271 GTAGATGGCAAAGGCCCCGGG 8291 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 |||||||||||||||||| || || | ||| ||||| ||||||| || |||||||| Sbjct 2813 CACCTGAAACTCTCCCGAGAGGACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGAT 2872 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 | || | |||||||| ||||| || || ||||| ||||| || || | ||||| Sbjct 2873 GGATTCGTTATTGCCCAGGATCTGAGCAGTTGAAGCAGTTGGCATTGGAGAAAGGAGCAG 2932 Query 244216 ACTGTTCCTCACGCCGT 244232 ||||| || || |||| Sbjct 2933 GCTGTTTCTGACACCGT 2949 >seq11853 Length=150111 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||| ||| | || || ||||| |||||||| || ||| |||| || || ||||| ||| Sbjct 133842 GTAGCTTTTGCAGCAGTAGAGGGAATCTTCTTTTCTGGCTCCTTTGCATCAATCTTTTGG 133783 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| | | | | ||||| |||||||| || || || ||||||||||| || || Sbjct 133782 CTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTCATCAGTAGAGAT 133723 Query 42828 GAGG 42831 |||| Sbjct 133722 GAGG 133719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943365184940640