Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq7236 98.7 9e-16 >seq7236 Length=503087 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || ||||| || | ||| || || | || |||||||||||||| || || || Sbjct 201440 AGGCCTGTGACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAGGGC 201381 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 ||||||| ||||| ||||| ||||||||||| || || ||||| | ||||| | | Sbjct 201380 ACTCCCAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAGGACAATTCACCATTTACA 201321 Query 20357 ACATAAAATTGACA 20370 |||||||| ||||| Sbjct 201320 ACATAAAACTGACA 201307 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/121 (77%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 20534 GCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGC 20593 |||||||||||||||||||||||||| ||||| ||||||||||| |||| ||||| || Sbjct 198489 GCCCCAAAGTGCCTCCACTGGAAACCATAAACGGGTCCCAAATCACCCT--CTTCTCTGT 198432 Query 20594 GCCAG--GCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTC 20651 ||| || || |||||||||| | |||||||| ||||| ||||| || | Sbjct 198431 TGCAGAAACCCTGCTTATCCAGGAACTCACGTGAGCCATTGGCATCCCAAATCTTCACAC 198372 Query 20652 C 20652 | Sbjct 198371 C 198371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440917557059760