Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq8606 140 8e-28 seq5912 131 4e-25 >seq8606 Length=302679 Score = 140 bits (154), Expect = 8e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| || |||||||||||||| | || || || || || Sbjct 263367 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAA 263308 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | ||| ||| ||||| ||||| || |||||||| || || ||||| || Sbjct 263307 GATCAGCCTCTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 263248 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||||| | || || || || ||||| ||||| |||||||| ||||| || Sbjct 263247 TTCAATAGTGTCGCTAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCAC 263188 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 263187 AAAGATCTGCAT 263176 >seq5912 Length=13300 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||||| || |||||||| || || | || || || |||||| Sbjct 8923 TCCTTCTGGATATTGTAGTCGGACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAG 8982 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || |||| ||||| ||||| |||||||| || || || |||||| Sbjct 8983 ATCAGCCTCTGCTG---ATCTGGGGGGATGCCTTCCTTATCCTGAATCTTGGCCTTCACG 9039 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | || ||||| || ||||| || ||||| ||||| ||||| Sbjct 9040 TTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTTTTCCCTGTCAGGGTCTTC 9099 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 9100 ACAAAGATCTGCAT 9113 Score = 118 bits (130), Expect = 2e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || |||||||| ||||| | || || || || ||| Sbjct 9151 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAG 9210 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| ||| |||||| || ||||| ||||||||||| || || || || Sbjct 9211 ATCAGCCTCTGCTGA---TCTGGGGGGATACCTTCCTTATCCTGGATCTTGGCCTTGACA 9267 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | || || || | ||||| |||||||| |||| |||||| Sbjct 9268 TTCTCAATGGTGTCACTAGGCTCAACCTCCAAGGTGATGGTCTTCCCTGTCAAAGTCTTC 9327 Query 288460 ACGAATATCTGCATT 288474 || || ||||||||| Sbjct 9328 ACAAAAATCTGCATT 9342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178407256834492