Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5912 113 4e-20 seq8606 109 5e-19 >seq5912 Length=13300 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | |||||| | ||| Sbjct 9130 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 9189 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| || || || || ||||| || || Sbjct 9190 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 9249 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| | || || || | || | |||| Sbjct 9250 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCAACCTCCAAGGTGATGGTC 9309 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || |||||||| || || ||||| |||||||| Sbjct 9310 TTCCCTGTCAAAGTCTTCACAAAAATCTGCATTTT 9344 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | |||||| | || Sbjct 8674 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCC 8733 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| || || || || ||||| || ||| Sbjct 8734 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCT 8793 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || || ||||| | || | ||| Sbjct 8794 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTT 8853 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||| || || || || || ||||| Sbjct 8854 TTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 8885 >seq8606 Length=302679 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || |||||||| || | | |||||| ||||| Sbjct 263387 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCT 263328 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| || || || || ||||| || || Sbjct 263327 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCTTCCTTGTCC 263268 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | | || || || | ||| | |||| Sbjct 263267 TGGATCTTGGCCTTCACATTTTCAATAGTGTCGCTAGGCTCGACCTCAAGAGTGATGGTC 263208 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||||||| || || || || || ||||| || Sbjct 263207 TTGCCGGTCAGGGTCTTCACAAAGATCTGCATGTT 263173 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || |||||||| || | | |||||| | ||| Sbjct 263615 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 263556 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| || || || || || || || || Sbjct 263555 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 263496 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 263495 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTC 263436 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 263435 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 263404 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || |||||||| || | | |||||| | ||| Sbjct 263843 AGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 263784 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| || || || || || || || || Sbjct 263783 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 263724 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 263723 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTC 263664 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 263663 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 263632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499129453862160