Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq12475 89.7 4e-13 seq9009 89.7 4e-13 >seq12475 Length=113484 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | || |||||||||||| | || ||| |||||||| |||||||| | || Sbjct 53031 GACCACCGAGTGCACCACAAGTACACCGAGACGGATGCCGACCCGCACAACGCGCTCCGG 53090 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGATCTCG 108594 || |||| ||||| ||||| || |||||| || || |||| |||| ||||| ||| | Sbjct 53091 GGCTTCTTCTTCTCCCACGTTGGCTGGCTCTTGGTGCGCAAGCACCCGGACGTCATCGAG 53150 Query 108595 GCCGGTCGAAAAATGGACATGACGGAC 108621 || ||||| |||| |||| ||| Sbjct 53151 AAAGGAAGAAAACTGGATTTGACTGAC 53177 >seq9009 Length=1034871 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 108464 AGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACA 108523 ||||||| | || ||| | ||||||||||||| ||| || || |||||||| |||| Sbjct 964367 AGTGGGTCCGAGACCACCGTGTTCACCACAAGTTCTCCGAGACAGATGCCGACCCTCACA 964308 Query 108524 ACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCG 108583 | ||||| |||| |||| ||||| ||||| || ||||| || || |||| |||||| Sbjct 964307 ATGCCAAGCGGGGCTTCTTCTTCTCCCACGTCGGCTGGCTGCTGGTGCGCAAGCACCCCG 964248 Query 108584 ACGTGAT 108590 | || || Sbjct 964247 ATGTCAT 964241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381388874240016