Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq5550 145 1e-29 seq11145 114 2e-20 >seq5550 Length=243327 Score = 145 bits (160), Expect = 1e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 9752 GCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTC 9811 |||||||| |||| || || || || |||| || | ||||||||| | |||||||||| Sbjct 178369 GCTCGTCATCCCACTCGGGATGCTCCCGTTTCAGGATATCGCAGACTCGATTGTGTTCTC 178428 Query 9812 TCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCA 9871 | |||||||| || || |||||||||||||| ||||| ||||||||||| || | ||| | Sbjct 178429 TGAGCCATATTGTAGCATACATCATTAAACCTGGCACCAAACCAAACACCTCCTGCCCGA 178488 Query 9872 CTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTT 9931 | | || ||| | || || || | || | |||||||| | |||| || || | Sbjct 178489 CGGAGAACTGCAAGTGCTCAGGAACATGAGGAGGGTACAGCATTTCTGCCTGCGTGTCCT 178548 Query 9932 TGACGGTGGGGGGATACATTTCACCGTCAATAACCTGA 9969 | || ||||| || |||||||| || ||||| | |||| Sbjct 178549 TCACTGTGGGTGGGTACATTTCCCCATCAATCATCTGA 178586 Score = 111 bits (122), Expect = 2e-19 Identities = 202/296 (68%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 ||||||| | || || || || ||||| ||| || ||||| ||| | || || | Sbjct 176428 GGAACGCTGTGAAGGGGCAGCCTTTCACGTTGTGGCAGATGAGCTTCTGCAGGGAGGCTG 176487 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || || |||||||||||||||||| | |||| Sbjct 176488 TATTGATTATTTCAAAGCCCACTTTTCCCCCAAAAGTGCTGGGTTTCCAGTACTCGGGGG 176547 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || || |||| ||| ||||| || || | || | || Sbjct 176548 AGCAGATAGCATTGCCCATCAGTCCCTTCAGGGAGAACGGCGCTCCGATTTCCACCATCG 176607 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || || |||||||| || || || || || || || | || ||| | || || || | Sbjct 176608 TTTCGCCAAAGATGGCGCCTGGTCGAGGCTTCTCTACCAGGAGGCCTGGATACAGCTCCA 176667 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | || ||||| || | |||| || || || || || || || ||| Sbjct 176668 TAGCGTCAATATCTCCATAAAGCTCCTCCAGTTCTGCTGCCATTTCTTTTTCTCCT 176723 Score = 107 bits (118), Expect = 3e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| || | || ||||||| | |||||| | ||| ||| |||| Sbjct 179631 TCTTACCCCATGGCCAAGAGCTTTCGTGAAGCCAGGTCCTTTCGTGTGATCTGTCTTAAA 179690 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 || || || || ||||| || |||| || | |||||||| ||| ||||| ||||| || Sbjct 179691 GAACTGATGAGTGAAGTGCTGAGCGAAGAATGTGAACATCACGTTTGTGCCTTGGGGGTC 179750 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || ||||| ||||||| | |||| ||| ||||||||| | ||||||| || || Sbjct 179751 AGGAATAAACTTCCTCCGCAGCAAAAATTTCTCCACAATCAGCTTTGAATCTGGGAG 179807 Score = 100 bits (110), Expect = 4e-16 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 10865 TAAAACCCCGTCCGCGTACAATCGCACCAATAACGATCAAACCCCACCGTCATGCATACC 10924 ||||| ||||||| ||| || |||||| || || || |||||| ||||||||| ||| Sbjct 181011 TAAAATCCCGTCCTCGTGCAGTCGCACTCGTAGCGGTCGAACCCCGTCGTCATGCACACC 181070 Query 10925 CCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTTGGCTG 10964 |||| |||||||| |||| ||| |||||||||||||||| Sbjct 181071 CCTCTGTTCTGGCAGGGGTTCGAGCAGCAAGGGTTGGCTG 181110 Score = 87.8 bits (96), Expect = 3e-12 Identities = 121/165 (73%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 9568 TGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAAG-GC-GG 9625 |||||| |||| || || ||||| || || || || |||||||||||||||||| || || Sbjct 177282 TGCCAGTGGTACAGAGTGTTGAATTCAGCTGCAATGCGGTTCTGGTACTGAAAGCGCTGG 177341 Query 9626 TACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGA 9685 | ||||| | ||| || ||||| | || | |||||||| || || || || || | Sbjct 177342 T--TGAACAACAGCTCGGGATCAAACTTCAGTTTAAAGTGGTAGCCACTCAGGTGTTGTA 177399 Query 9686 CATACTGTGTGATTATAATGTTAATGGTTTCCCCGGTAATGATTA 9730 |||| | | || | ||| || |||||||| || || |||||| Sbjct 177400 CATAGTCTTCAATAACAATCTTGATGGTTTCTCCTGT--TGATTA 177442 >seq11145 Length=378118 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 || || || |||||||||||||||||| | |||||||||||| ||| | | |||||| Sbjct 244749 CCACCAAATGTGCTGGGTTTCCAGTACTCGGGGGAGCAGATGGGGTTTCCTAGGAGCCCC 244808 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 ||||||||||| |||| || | ||| | ||||| || || || || | | |||| | Sbjct 244809 TTCAAGGAAAATGGAGATCCAATCTCCACCATGCTTTCCCCAAACATTGAATTGGGAAGG 244868 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| |||| | ||||| ||| | || | || || | ||| |||||||| | Sbjct 244869 GGTTTCTCGAGCAGCAAGCCCACGTAAAACTCCAGGGCATCAATGTCTCCATAGAGCTCC 244928 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| || || |||| | ||| ||| || Sbjct 244929 TCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCA 244961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722981528847600