Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq5912 129 1e-24 seq8606 127 5e-24 >seq5912 Length=13300 Score = 129 bits (142), Expect = 1e-24 Identities = 162/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || |||||||| |||| ||||||||| | || || | |||||| Sbjct 9129 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATC 9188 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || || ||||| || Sbjct 9189 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATC 9248 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || ||||| ||||| || Sbjct 9249 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCAACCTCCAAGGTGATGGT 9308 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGC 199638 ||| || || | ||| ||||||||||| || |||||| || Sbjct 9309 CTTCCCTGTCAAAGTCTTCACAAAAATCTG---CATTTTTGC 9347 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || |||||||| |||| |||||||| | || || | |||||| Sbjct 8901 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGTCCATC 8960 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || |||||||| || | |||||| || || || ||||| || Sbjct 8961 CTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATC 9020 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||||||| ||||||| || | |||||| | | || || |||| ||||| || Sbjct 9021 CTGAATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGT 9080 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| || || Sbjct 9081 TTTCCCTGTCAGGGTCTTCACAAAGATCTG 9110 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || |||||||| |||| ||||||||||| || || | |||||| Sbjct 8673 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATC 8732 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || || ||||| || | |||||| || || || ||||| || Sbjct 8733 CTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATC 8792 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||||||| || | |||||| | | || || |||| ||||| || Sbjct 8793 TTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGT 8852 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| || || Sbjct 8853 TTTCCCTGTCAGGGTCTTCACAAAGATCTG 8882 >seq8606 Length=302679 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || || ||||| |||| ||||||||||| || || | |||||| Sbjct 263844 CAGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATC 263785 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| ||||| || || || || Sbjct 263784 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTGTC 263725 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| | | ||| || |||| ||||| || Sbjct 263724 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGT 263665 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 263664 CTTGCCAGTCAGGGTCTTCACAAAGATCTG 263635 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || || ||||| |||| ||||||||| | || || | |||||| Sbjct 263616 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATC 263557 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| ||||| || || || || Sbjct 263556 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTGTC 263497 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| | | ||| || |||| ||||| || Sbjct 263496 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGT 263437 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 263436 CTTGCCAGTCAGGGTCTTCACAAAGATCTG 263407 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || || ||||| |||| ||||||||| | || || | ||| || Sbjct 263388 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTC 263329 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| ||||| || ||||| || Sbjct 263328 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCTTCCTTGTC 263269 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| ||| | ||||| | | || || || | ||||| || Sbjct 263268 CTGGATCTTGGCCTTCACATTTTCAATAGTGTCGCTAGGCTCGACCTCAAGAGTGATGGT 263209 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 263208 CTTGCCGGTCAGGGTCTTCACAAAGATCTG 263179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177675231558438