Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq11249 107 1e-17 seq2848 96.9 3e-14 >seq11249 Length=37093 Score = 107 bits (118), Expect = 1e-17 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | || ||||||||||| |||||| |||| | || || || |||||||||| Sbjct 19277 CAAAGACTGTGTTGGTTGGATTCATTGCAACTTGGTTCTTTGCAGCGTCTCCAATCAACC 19336 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| || | ||| || ||| || || |||||||| || ||||| |||| Sbjct 19337 TCTCTGTGTCTGTGAAGGCAACGTAGCTTGGGGTGGTCCGATTACCCTGGTCATTGGCAA 19396 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| || || |||| ||| | ||||| ||||| | | || || || | ||||| Sbjct 19397 TGATTTCCACCTTCCCATGTTGGAACACACCAACACAGGAATAGGTGGTGCCAAGATCAA 19456 Query 518703 TACC 518706 | || Sbjct 19457 TTCC 19460 Score = 95.1 bits (104), Expect = 9e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || |||||||| |||| ||||||||||||||| ||||| || |||| | || Sbjct 18346 TTCTTGTCCAGACCATATGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGGAGCACG 18405 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || || ||||| |||| ||||| || || || || | || || ||||| ||||| Sbjct 18406 TTGAGCCCTGCAATGGTTCCAGCATCCTTTGTAGCCTGGCGCTGAGAGTCGTTGAAATAG 18465 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || ||||| | || |||| Sbjct 18466 GCCGGTACAGTGACCACCGCAT 18487 >seq2848 Length=160031 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| ||| | ||||| || ||||| || |||||| | ||| | | ||||| Sbjct 65273 TGTTGTAGCTACAGTGGCATTCGGAATGGGCATCAATAAAGCAGATATCCGGAAGGTTAT 65332 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| || || ||| | || ||| ||||| ||||||||||| ||||| ||||| Sbjct 65333 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTACCAAGAAATTGGGAGAGCCGGTCG 65392 Query 367113 TGATGG 367118 |||||| Sbjct 65393 TGATGG 65398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3776727783518884