Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq5265 269 3e-67 seq11249 217 2e-51 >seq5265 Length=134520 Score = 269 bits (298), Expect = 3e-67 Identities = 1030/1599 (64%), Gaps = 36/1599 (2%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 ||| || ||| |||| || || || || || || ||||| || || || || || Sbjct 85978 TTCGTCCTCAGCTTTGTATTTCTCTGCTTCCTGCACCATGCGGTCGATATCATCCTTGCT 85919 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | |||||| || || || ||||| ||||| | || |||| | ||| || | Sbjct 85918 GAGGCGCCCCTTGTCGTTGGTGATCGTGATCTTGTTCTCCTTCCCCGTGCTCTTGTCCAC 85859 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 |||||| ||||||| |||||||| ||||| | || ||| | || | || || || Sbjct 85858 AGCACTGACATTCAGGATACCATTGGCATCTATGTCAAACGTCACCTCGATCTGGGGG-- 85801 Query 6748 ACCCCTCGGTGCG--GCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCC 6805 || || ||| ||| | || || || |||| |||||| | || || || |||| ||| Sbjct 85800 ACGCCACGGGGCGCTGGGGGGATCCCTGTTAGATCAAACTTGCCCAGCAAGTTGTTGTCC 85741 Query 6806 GTCGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTT 6863 | | | | | || || ||||| || | | | ||| || || || ||| Sbjct 85740 TTTGTCATGGCCCTCTCGCCCTCATACACCTGCACAAGGACACTGCTC--TGGTTGTCTG 85683 Query 6864 GTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCG 6923 || | |||| | || || ||| | ||||| || || || | | || | | Sbjct 85682 AGTAGGTGGTGAAGGTCTGGGTTTGCTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAG 85623 Query 6924 GGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTA 6983 |||||| | || || ||| |||| || || |||||||| || || ||||| | | Sbjct 85622 CGGTCATTACTCCTCCGGCAGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAAGA 85563 Query 6984 ACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCC 7043 ||| || || || || | |||||| | | ||| || ||||| || | || | Sbjct 85562 GCAGATCCTGCACGTTCTCAGACTTGTCACCCATGAGGATCGCTGCTTGCACGGCAGCAC 85503 Query 7044 CGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAAT 7103 | || || || |||||||| || || || |||| || || ||||| || || || | | Sbjct 85502 CATAAGCAACGGCCTCATCTGGATTGATGCTTTTGTTGAGCTCTTTGCCATTGAAGAAGT 85443 Query 7104 CCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCAT 7163 || || || | || || || || || || || || || || |||| || || || | Sbjct 85442 CCTGTAGCAGCTTCTGGATCTTGGGTATACGAGTGGAGCCGCCCACCAGCACTATCTCCT 85383 Query 7164 TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATT 7223 | || || || | || | || || || | || || || || || | || | Sbjct 85382 GGATTTGGCCCTTGTCTAGTTTGGCATCACGCAGGGCCTTCTCCACTGGCTCTA-ACGTG 85324 Query 7224 T-ACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 |||||| | || || |||||||| || ||||| |||||||| || ||||| Sbjct 85323 CCACGGAAGAGATCAGCGTTGAGCTCCTCAAAGCGGGCACGAGTAATGGAGGTGTAGAAG 85264 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342 |||| ||| || || | ||| || || |||||| | | ||| | | || | || Sbjct 85263 TCAATGCCCTCATACAGCGAGTCGATCTCAATGCTAGCTTGGGTGGAGGAGCTGAGGGTG 85204 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 ||||| || | ||| || || || || | || | | || ||| || || | ||| Sbjct 85203 CGCTTAGCTCTCTCGCAAGCGGTGCGCAGCCGTCTCACTGCTCGCTTATTGCCCGCAATG 85144 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAA 7462 || ||| || |||||||| |||||||| ||||| | | | || || Sbjct 85143 TCACGCTTGTGCTTACGTTTGAACTCTTCTACAAAGTGGTTCACCATGCGGTTGTCAAAG 85084 Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || || ||||||| || ||||| || || || | || |||||||||||||| | ||| Sbjct 85083 TCCTCCCCACCCAGATGGGTATCACCAGCTGTGGACTTCACTTCAAAGATACCATCCTCA 85024 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | | || |||||||| || || || |||| |||||||||||| || ||| | Sbjct 85023 ATGGTGAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAAATGAGCACATTCTTC 84964 Query 7583 TCGTCGTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || | | | |||||||| | || ||||| || || || ||||| || || Sbjct 84963 TCTCCAGCCCGGGTACCTTTCTTATCCAAGCCATACGCTATGGCAGCTGCCGTGGGCTCG 84904 Query 7637 TTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || || || | ||| || ||||||| || || | |||||||| || || || || Sbjct 84903 TTGATGATGCGCATCACA-TTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTGGCG 84845 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || || || ||||| || || || || | || || | | || || || || Sbjct 84844 CTGGGAGTCATTGAAGTAAGCTGGCACTGTGATAACAGCATTCTGCACCTTGCGGCCCAG 84785 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 || | || || || || ||||| |||||||| ||||| || ||||| || | | Sbjct 84784 GTAAGCCTCAGCAATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCTCTG--GA 84727 Query 7816 AA-ACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873 || | || ||| | ||||| || | || |||| | | |||| || || ||| Sbjct 84726 AAGAAGGTCTTCATCTCACCCTTGTATTCCACTTGCACCTTGGGCTT----GC--CACTC 84673 Query 7874 GGGATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAAC 7930 | ||| | | | ||| | |||||||| || ||| |||| | || Sbjct 84672 TCATTCACCACACGGAAGGGCCAGTGCTTCATATCTGACTGCACCGTGGGGTCATCATAC 84613 Query 7931 TTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGG 7990 || | ||||| || ||||| ||||| || | ||||| |||||||||| || |||| Sbjct 84612 TTGCGGCCGATGAGGCGCTTGGCATCGAAGATGGTGTTGGTGGGGTTCATAGCCACTTGG 84553 Query 7991 TTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG 8050 ||||| || || || ||||| || || ||| || || || || || || || | |||| Sbjct 84552 TTCTTGGCAGCATCGCCGATGAGGCGCTCAGTA---TCGGTGAAGGCCACATA-GCTGGG 84497 Query 8051 -GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCC 8109 || || || || || |||||||| ||||| || || || | | | || ||||||| Sbjct 84496 TGTGGTGCGGTTGCCCTGGTCGTTGGCAATGATCTCCACTTTGCCATGCTGGAAGACGCC 84437 Query 8110 GACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||||| |||||||| || || || || || ||||| || Sbjct 84436 CACGCAGGAATACGTGGTGCCCAAGTCGATGCCGATCGC 84398 >seq11249 Length=37093 Score = 217 bits (240), Expect = 2e-51 Identities = 375/542 (69%), Gaps = 6/542 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || ||||| || || || | || |||| ||||| || || || Sbjct 17697 GCACCGTAAGCCACTGCTTCATCAGGATTGATGCTCTTGTTCAACTCTTTGCCATTGAAG 17756 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || || ||||| || ||||| || || || ||||| ||||| ||||| Sbjct 17757 AAATCCTGCAGCAGTTTCTGAATCTTTGGGATACGAGTAGAGCCACCAACCAACACGATG 17816 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | ||||| || | ||| | || || || | ||||| || || |||| Sbjct 17817 TCATGGATCTGTGATTTGTCTAACTTGGCATCCCGCAGGGCCTTTTCCACGGGATCCAGG 17876 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| | ||| || ||||| || || | ||||||||| || ||| Sbjct 17877 GTGCCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGGACGTGTAG 17936 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | ||||| |||||||| | | || | | || || | Sbjct 17937 AAGTCAATACCCTCATAGAGAGAATCGATTTCAATACTGGCCTGCGTGCTGGAGGAGAGG 17996 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| ||||| |||||||| || | ||||||| || | | ||| || Sbjct 17997 GTACGCTTTGCACGCTCGCACGCCGTGCGGAGGCGACGAACTGCTCTCTTGTTCTCGCTG 18056 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAA 7456 ||||||||||| || || || || ||||| | ||||| || || | | | | | Sbjct 18057 ATATCTTTCTTGTGCTTGCGCTTGAACTCAGCGATGAAGTGGTTGACCATGCGGTT---A 18113 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||| ||||||| ||| ||||| || || || | ||| || |||||||| || Sbjct 18114 TCGAAGTCTTCTCCACCCAGGTGAGTATCACCTGCAGTGGATTTCACCTCAAAGATGCCA 18173 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | || | || ||||| || || ||||| || |||||||| || || ||| Sbjct 18174 TCTTCAATAGTCAAAATGGACACATCGAAGGTGCCACCTCCAAGGTCAAAGATAAGGACG 18233 Query 7577 TT 7578 || Sbjct 18234 TT 18235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634477708151760