Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq5912 131 4e-25 seq8606 109 1e-18 >seq5912 Length=13300 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || |||||||| |||| || || | ||||| || Sbjct 8905 ACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGTCCATCCTCC 8964 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || | || || ||||| || |||||||| || || ||| Sbjct 8965 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCCTGA 9024 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||||||||||||||| ||| || ||||| ||||| | || Sbjct 9025 ATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACTTCCAGGGTGATGGTT 9081 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||| || || || || | ||||| Sbjct 9082 TTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 9113 Score = 129 bits (142), Expect = 1e-24 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| |||| || || | |||||||| Sbjct 9133 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 9192 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || ||||| || || ||||| || || || Sbjct 9193 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGG 9252 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| |||||||||||||| | || || || | ||| | ||||| Sbjct 9253 ATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCAACCTCCAAGGTGATGGTCTTC 9312 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTTATG 195145 ||||||||||| || || || | ||||||| || Sbjct 9313 CCTGTCAAAGTCTTCACAAAAATCTGCATTTTTG 9346 Score = 118 bits (130), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| || | || || | ||||| || Sbjct 8677 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCCTCC 8736 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || ||||| || |||||||| || ||||| Sbjct 8737 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCTTGG 8796 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||||||||||||||| ||| || ||||| ||||| | || Sbjct 8797 ATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACTTCCAGGGTGATGGTT 8853 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||| || || || || | ||||| Sbjct 8854 TTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 8885 >seq8606 Length=302679 Score = 109 bits (120), Expect = 1e-18 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || ||||| || ||||| || || || || ||||| |||| || || Sbjct 263625 TCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGT 263566 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || || || || || ||||| Sbjct 263565 GCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCC 263506 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || ||||| || || || ||| || |||||||||||||| ||| ||| || || Sbjct 263505 CTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGTTCAACCTC 263449 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || || || | ||||| Sbjct 263448 CAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 263404 Score = 104 bits (114), Expect = 5e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| || || || || ||||| || | || || | |||||||| Sbjct 263840 ACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 263781 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || || ||||| || ||||| || Sbjct 263780 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGG 263721 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| ||| || || ||||| | ||| Sbjct 263720 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGTTCAACCTCCAGGGTGATGGTC 263664 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 263663 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 263632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108308644264238